Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq6 185 3e-41 seq21 93.3 1e-13 seq652 91.5 4e-13 seq305 91.5 4e-13 seq666 89.7 2e-12 seq163 87.8 5e-12 >seq6 Length=242052 Score = 185 bits (204), Expect = 3e-41 Identities = 182/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || ||||| |||||||| ||||| || || || || | Sbjct 168775 TTTGCATACCACCACGGAGACGGAGGACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGT 168834 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || | || || ||||| ||||||||||| ||||||||||| | |||||||||| Sbjct 168835 AATCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAGATCAATCGTTGCTGAT 168894 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| || || || || |||||||| || || || ||||| || |||| ||||| | Sbjct 168895 CAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATCGTGTCAGAGG 168954 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || |||||||| || | || || ||||| || || || || ||||||||||| Sbjct 168955 ACTCGACTTCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169009 Score = 165 bits (182), Expect = 2e-35 Identities = 142/176 (81%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621 |||||||| || ||||| |||||||| | || ||||| |||||||| | ||||||||| Sbjct 169116 TAATCAGACAAAGTTCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCTGA 169175 Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681 ||||||||||| ||||| ||||||||||| || || || ||||| || |||| ||||| Sbjct 169176 TCAGGAGGAATACCTTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCAGAA 169235 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || ||||| |||| ||||||||||| || || || || ||||||||||| Sbjct 169236 GACTCGACCTCAAGAGTAATAGTCTTTCCGGTAAGGGTCTTGACGAAAATCTGCAT 169291 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | | || ||||| || || ||||| ||||| || || || || Sbjct 169289 CATACCACCTCGGAGACGCAAGACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTC 169348 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || ||||||||||| ||||| || || |||| || ||||| ||||| Sbjct 169349 GGAAAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGG 169408 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || |||||||| || || || ||||| || || | ||||| | || Sbjct 169409 AGGAATACCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGACTC 169468 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| || | || || ||||| || || || || ||||||||||| Sbjct 169469 AACCTCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169519 Score = 143 bits (158), Expect = 8e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || |||||||||||||| |||||||||||||| || || || || Sbjct 168495 ACCACCACGGAGACGGAGGACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGGA 168554 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || ||||| ||||| ||||| || || ||||||||||| || || Sbjct 168555 AAGGGTACGACCATCCTCTAGTTGCTTTCCGGCAAAAATGAGTCGTTGCTGATCGGGGGG 168614 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || ||||| || || || || || || || ||||| || || | ||| | ||| || Sbjct 168615 GATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATTGTATCGCTAGATTCGAC 168674 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAG 140716 ||||| |||| |||||| || || || Sbjct 168675 CTCAAGAGTAATTGTCTTACCCGTAAG 168701 Score = 105 bits (116), Expect = 2e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639 ||||||||||| || || ||||||||||| | || ||||| |||||||| || || || Sbjct 169641 CCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGGATACCCTCC 169700 Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699 || ||||| || || | || ||||| || || | || || | || ||||| || || Sbjct 169701 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCGAGAGTG 169760 Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| ||||| || || || || ||||||||||| Sbjct 169761 ATAGTCTTACCGGTGAGGGTCTTGACGAAAATCTGCAT 169798 >seq21 Length=50189 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 67897 GAAATTAAAGTTGCACAATTTAGTGGTTATGTTTCAGAACATTCAGGCTATCATCACGGT 67956 |||||||| || || || || ||||| ||||| || | | | |||||||| ||| Sbjct 7572 GAAATTAAGGTCGCTCAGCTTGTCGGTTACGTTTCGGAGAAGACTGCATATCATCATGGT 7631 Query 67957 GAAGCTAGTTTAAATTCATCAATTGTAGGTTTAGCTCAGAATTTTGTTGGATCAAATAAT 68016 ||||||||||| | || | || | || ||||| || || ||||| || || ||| Sbjct 7632 GAAGCTAGTTTGACGTCTACCATCATCGGCTTAGCACAAAACTTTGTCGGCAGTAACAAT 7691 Query 68017 ATTAATTTACTAGAACCAAAAGGTCAATTTGGAACTAGATTACTTGGAGGAAAAGATGCT 68076 || ||| | |||| || || ||||| ||||| ||| || | || || ||||| ||| Sbjct 7692 ATCAATCTGTTAGATCCCAACGGTCAGTTTGGTACTCGACTTGCAGGTGGTAAAGACGCT 7751 Query 68077 GCATCTGAAAGATATATATTTACACATCT 68105 || |||| | ||||| || ||| |||| Sbjct 7752 GCTTCTGCTCGTTATATCTTCACAAATCT 7780 >seq652 Length=410 Score = 91.5 bits (100), Expect = 4e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 349787 GGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAA 349846 |||||||||||||| ||||| || || | || |||| ||||| || || || ||||| Sbjct 55 GGTGGTGGTACTTTCGATGTGTCCCTCTTGACCATTGAGGAGGGTATCTTCGAGGTTAAG 114 Query 349847 GCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 || || |||||||| || ||||||||||| ||||| || || || || || || Sbjct 115 GCTACCGCTGGTGACACTCATCTTGGTGGTGAAGACTTCGACAACCGACTTGT 167 >seq305 Length=7100 Score = 91.5 bits (100), Expect = 4e-13 Identities = 109/147 (74%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 349271 GCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGT 349330 || || ||||| || || ||||||| |||||||||||||| || | || |||| || Sbjct 6637 GCCAACGATCAGGGCAATCGAACAACACCATCATACGTTGCGTTCAATGACTCTGAACGA 6696 Query 349331 ATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGAT 349390 | ||||||||| | || || ||||||| ||| ||||| | || || ||||| ||| Sbjct 6697 CTCATTGGTGATGCCGCGAAGAATCAAGTTGCAATGAATCCTTACAACACAGTTTTCGAT 6756 Query 349391 GCTAAGCGACTTATTGGTAG-AAGTTT 349416 |||||||| | ||||| | |||||| Sbjct 6757 GCTAAGCGGTTGATTGGCCGCAAGTTT 6783 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 |||||||| ||||| ||||| || || ||||| |||||||| ||||||||||| ||||| Sbjct 6511 GCTATAGGTATCGACTTAGGCACCACCTATTCCTGTGTTGCCGTTTGGCAAAACGATCGG 6570 Query 349259 GTAGAAATAATTG 349271 || |||||||||| Sbjct 6571 GTGGAAATAATTG 6583 >seq666 Length=415 Score = 89.7 bits (98), Expect = 2e-12 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 || || ||||| || | || ||| || || || || | || || || | |||||| Sbjct 1 TACGGTCTTGACAAGAAGACTGAGGGTGAGAAGAACGTTTTGATCTTCGACCTTGGTGGT 60 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 |||||||| ||||| || || | || |||| ||||| || || || ||||| || || Sbjct 61 GGTACTTTCGATGTGTCTCTCTTGACCATTGAGGAGGGTATCTTCGAGGTTAAGGCTACC 120 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 |||||||| || ||||||||||| || || || || || || || || Sbjct 121 GCTGGTGACACTCATCTTGGTGGTGAGGACTTCGACAACCGACTTGT 167 >seq163 Length=95501 Score = 87.8 bits (96), Expect = 5e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || ||||||| || ||| |||||| || ||||| ||| | ||||| || ||| Sbjct 89754 CGAGGAACACCACCAGTCACA---GATTTACTCGCCACACCCGCATAATGGAATGTGTTA 89698 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||||| | ||||||||||| ||||| || |||| ||||||||||| Sbjct 89697 AGCGTCATCTGAGTGGCAGGCTCACCAATAGACTGAGCAGCAAGCGTACCAACCATTTCG 89638 Query 377578 CCAGGATTGACAATAGCCT 377596 ||| |||||||| ||||| Sbjct 89637 GCAGCATTGACAACAGCCT 89619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515239276340537