Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq95 188 8e-43 seq6 113 5e-20 seq258 89.7 6e-13 >seq95 Length=57217 Score = 188 bits (208), Expect = 8e-43 Identities = 787/1232 (64%), Gaps = 24/1232 (2%) Strand=Plus/Plus Query 19217 CTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAG 19276 |||||||| |||||||| | || |||||||| || || || || || |||||| Sbjct 50536 CTTTTCAATGCCGGTACTCCCCGGCCCCAGATGTCATCATGCTTTCTCGTAGCCATGAAG 50595 Query 19277 GATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGG 19336 ||||| |||||| || |||||||| || |||||| || || || ||||||||| Sbjct 50596 GATGATTCCATTGATGGTATCTACGATACTCTCAAGACTTGTGCTCAGATCTCCAAGACC 50655 Query 19337 TCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGG 19395 | || ||||| || | ||| | | | |||||||| ||| || | || || Sbjct 50656 GCTGGTGGTATTGGTCTTCACATTCAC-AATATCCGTGCGAAGGGCTCCTACATTGCCGG 50714 Query 19396 GACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAG 19455 || ||||| | |||||||| | || |||||||| | | || ||| || | Sbjct 50715 TACCAACGGTTACTCTAACGGTATCATTCCTATGCTCCGAGCTTATGACGCCACTGCTCG 50774 Query 19456 GTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATG 19515 ||||| |||| || ||| ||| || || | ||||||||||| || ||||| || Sbjct 50775 ATACGTTGACCAAGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCCTG 50834 Query 19516 GCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCG 19575 |||||| || || | |||||| | || | | |||||| ||| | |||||| | || Sbjct 50835 GCACGCTGATGTATTTGATTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTACG 50894 Query 19576 CTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAA 19635 ||| || || ||| ||| | ||||| || || || |||||| || || || Sbjct 50895 AGCTCGTGATCTTTTCTACGCCCTCTGGATCCCCGATCTTTTCATGAAGCGTGTCGAATC 50954 Query 19636 GGACGAAGAATGGCACCTGATGTG-CCCGCACGAATGCCCTGGCCTACCCGACGTCTACG 19694 || | || ||| ||| ||||| ||||| || || ||||| || ||||||| |||| Sbjct 50955 CGATGGGGACTGGACCCTTATGTGTCCCGC-TGAGTGTCCTGGGCTTGCCGACGTATACG 51013 Query 19695 GCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGG 19754 | || | || | || | ||| || |||| ||||| | | || Sbjct 51014 GAGAAGAATTTGAGAAGCTTTACGAGAGCTACGAGAGGCAGGGTAAGGGGAGAAAAACTA 51073 Query 19755 TCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGT 19814 || |||| | | | ||| | |||| | ||| ||||| || || | Sbjct 51074 TCAAAGCCCAGAAGCTTTGGTTCGCTATCCTTGAGGCTCAGACAGAGACTGGTGTCCCTT 51133 Query 19815 ACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCA 19874 |||| || || ||||| ||||| ||| ||||||| || || ||| || | || | || | Sbjct 51134 ACATCTGTTATAAGGATGCCGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCATTA 51193 Query 19875 AGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGT 19934 |||| || || ||||||||||| |||||| ||| || || ||| |||||| | Sbjct 51194 AGTCCAGTAATCTCTGTACTGAAATTATGGAGTATTCTTCTCCCGATGAGGTTGCCGTCT 51253 Query 19935 GTAATCTGGCGTC----CCTGTGCCTGCCGACTT---TCGTCAAGGCCTCCTCCTTCGAC 19987 |||| || || || || | |||||| | | || | || | | | | || |||| Sbjct 51254 GTAACCTCGCTTCTCTTGCTCTTCCTGCCTTCGTGGATCTTGAACGTCGCGT-CTACGAC 51312 Query 19988 TTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGAT 20047 || || || | ||| | ||| ||| || | || || | ||||| Sbjct 51313 TTCAAGAAGCTGCATGAGATTACCAAGGTTGTTGCCAAGAACCTCGACACTGTCATTACC 51372 Query 20048 CGGAACTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATC 20104 || |||| || || | | || ||| ||||| || || |||||||| || || | Sbjct 51373 CGTAACTACTATCCAGTGCCTGA---GGCCCGCAACTCCAACATGCGCCATCGACCTGTT 51429 Query 20105 GCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGAT 20164 | | || ||||| || || || |||| ||||||| || || | | |||||| | Sbjct 51430 GGCCTTGGTGTCCAAGGTCTCGCTGACGCTTTCATGGCCCTTCGCATGCCGTTCGACTCT 51489 Query 20165 CCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTG 20224 | |||| | |||||||| | ||||||||| || | ||||||||||| || | Sbjct 51490 CTTGAGGCCAGGGAGCTCAATATCCAGATCTTCGAGACCATTTACCACGCGGCGCTTGAG 51549 Query 20225 GAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCG 20284 | || ||||| || || | || | || | || ||| | | | | || || ||| Sbjct 51550 GCTTCATGCGAGCTTGCTGAGGAACAGGGTACCTATGAGTCTTACGAAGGCTCTCCCCTT 51609 Query 20285 TCCGAGGGTATCCTCCAGCCGGACATGTGGGG-CGT-----CACTGAGAATGAGTTTTGG 20338 || | |||||||| ||| ||||||||||| ||| ||| || | | ||| Sbjct 51610 TCTAAAGGTATCCTTCAGTATGACATGTGGGGCCGTGTTCCCACCGACCTTTGGGACTGG 51669 Query 20339 AGCGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCC 20398 | | || |||| ||||| ||||| | | ||||| ||||||||||| || Sbjct 51670 ACAGAGCTGAAGGCGAAGATCGCACAGCACGGTGTGAGGAACTCTTTGCTCGTCGCCCCT 51729 Query 20399 ATGCCGACCGCCTCGACCGCCCAGATCATGGG 20430 ||||| || ||||| || |||| || |||| Sbjct 51730 ATGCCTACTGCCTCAACTTCCCAAATTTTGGG 51761 Score = 170 bits (188), Expect = 2e-37 Identities = 786/1236 (64%), Gaps = 32/1236 (3%) Strand=Plus/Minus Query 78574 CCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGA 78633 |||| || |||| || ||||| || ||||| || ||||| || | ||| |||| | | Sbjct 51761 CCCAAAATTTGGGAAGTTGAGGCAGTAGGCATAGGGGCGACGAGCAAAGAGTTCCTCACA 51702 Query 78634 CCATGCGTCTTGATCTCGACCTTTAGGCC------GTCCCAAAATTCATTCGCCGCGATC 78687 || ||| ||||| |||| || | |||||||| || | | | Sbjct 51701 CCGTGCTGTGCGATCTTCGCCTTCAGCTCTGTCCAGTCCCAAAGGTCGGTGGGAACACGG 51642 Query 78688 CCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAA 78747 ||||||||||| ||||||||||| | || || || || | | | | ||| || Sbjct 51641 CCCCACATGTCATACTGAAGGATACCTTTAGAAAGGGGAGAGCCTTCGTAAGACTCATAG 51582 Query 78748 GATCCCTCCTCCTTGGCGAGTTCGCATGA---CTCGAGCAGGGCCGCGTGGTACACAGCC 78804 | |||| |||| || || |||||||| ||| ||| ||||||||||| | | | Sbjct 51581 GTACCCTGTTCCTCAGCAAGCTCGCATGAAGCCTCAAGC---GCCGCGTGGTAAATGGTC 51525 Query 78805 TCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATC 78864 |||||||| | |||||||| | |||| |||||||| | || || | Sbjct 51524 TCGAAGATCTGGATATTGAGCTCCCTGGCCTCAAGAGAGTCGAACGGCATGCGAAGGGCC 51465 Query 78865 ATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTC 78924 ||||| | || || || || ||||| || | | | ||||| |||||||||||| Sbjct 51464 ATGAAAGCGTCAGCGAGACCTTGGACACCAAGGCCAACAGGTCGATGGCGCATGTTGGAG 51405 Query 78925 TTTCGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGC 78981 || |||||| || | | || || |||| || ||||| || ||||| Sbjct 51404 TTGCGGGCC---TCAGGCACTGGATAGTAGTTACGGGTAATGACAGTGTCGAGGTTCTTG 51348 Query 78982 GTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTTT--GATGA 79039 | || ||| || | ||| | || || ||| || | | || ||| Sbjct 51347 GCAACAACCTTGGTAATCTCATGCAGCTTCTTGAAGTCGTAGACGCGACGTTCAAGATCC 51288 Query 79040 AAGTCGGTAGGCACAGC----GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAA 79095 | | || ||| | ||| || || ||||| || ||||| ||| || || |||| Sbjct 51287 ACGAAGGCAGGAAGAGCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAA 51228 Query 79096 ACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTG 79155 ||| || ||||| || || | |||| ||||| ||||| || | || ||| |||||| Sbjct 51227 TACTCCATAATTTCAGTACAGAGATTACTGGACTTAATGGTACCAAGGTGCTTTTGGTTG 51168 Query 79156 CTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTC 79215 ||| ||| ||| ||||| || || ||||| || || ||||| |||| | Sbjct 51167 GACTTGGAGTTGGCGGCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCC 51108 Query 79216 TTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCG--ACCCTGTG 79273 | || | || ||| | | | |||| || | || || | || |||||| Sbjct 51107 TCAAGGATAGCGAACCAAAGCTTCTGGGCTTTGATAG--TTTTTCTCCCCTTACCCTGCC 51050 Query 79274 CGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGC 79333 |||| || ||| | || | || | || || || || |||| || || || | Sbjct 51049 TCTCGTAGCTCTCGTAAAGCTTCTCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGAC 50990 Query 79334 ACTCGTGCGGG-CACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGG 79392 |||| ||||| ||||| ||| ||||||| | || || || || |||||| || Sbjct 50989 ACTCA-GCGGGACACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGA 50931 Query 79393 TCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTC 79452 || |||||||| ||||| ||| || || || || | |||||| | || |||||| Sbjct 50930 TCGGGGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTC 50871 Query 79453 AGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAAC 79512 | | || | || || | | || |||||||| ||||| |||||||||||||| Sbjct 50870 TTCCTTAAGTCAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAAG 50811 Query 79513 GAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGG 79572 | ||| |||||| ||| || |||| ||||| || || ||| || || ||||| Sbjct 50810 GCACCAGGACGCTTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCGG 50751 Query 79573 AGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCC 79632 ||||| || | ||| |||| | | ||||| || ||| || | || |||| Sbjct 50750 AGCATAGGAATGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCA 50691 Query 79633 CGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTC 79691 || || || | | | ||| | || || || || | ||||||||| || || || Sbjct 50690 CGGATATT-GTGAATGTGAAGACCAATACCACCAGCGGTCTTGGAGATCTGAGCACAAGT 50632 Query 79692 CTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751 |||||| || |||||||| || || || || || |||||||| || || || ||||| Sbjct 50631 CTTGAGAGTATCGTAGATACCATCAATGGAATCATCCTTCATGGCTACGAGAAAGCATGA 50572 Query 79752 CGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAG 79787 |||||||| || | |||||||| ||||| || Sbjct 50571 TGACATCTGGGGCCGGGGAGTACCGGCATTGAAAAG 50536 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 78282 GATGTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGAC 78341 |||||| || |||||||||||||| ||| | || || ||||| || || | ||||||||| Sbjct 52110 GATGTTAAGGGACTGGGACTGGTCAATGAAAGCTCCTCGGTCAGCTGCAAGGTCGATGAC 52051 Query 78342 CGACTTTTGCGGAATCTCCCAGATGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGT 78400 | ||| |||| ||||||||||| || || ||||| || || || || |||||| Sbjct 52050 AGCCTTCTGCGAAATCTCCCAGACAGTTCGATAAATCTTTTTGAGATCATCAGGGATGT 51992 >seq6 Length=242052 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 || ||||| ||||| || ||| ||||| |||||||||||||| || ||| | || Sbjct 183692 CGACTCATCGCTTTCGCTGCCGTCGAAGGTATCTTCTTCTCTGGTTCTTTCGCCTCCATC 183751 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 ||||||||||| ||||| || |||||||| || || | ||||| |||||||| || || Sbjct 183752 TTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGAGCTCATCTCT 183811 Query 60102 CGGGACGAGGGCCTCCA 60118 || |||||||| ||||| Sbjct 183812 CGTGACGAGGGTCTCCA 183828 >seq258 Length=65905 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 |||||||||||||||||||| || ||||| ||||| || || |||||| |||||| | Sbjct 13747 GCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCCTTTGCTGCTATCTTCTGGTTG 13688 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || ||| | || | ||||| || |||| ||||| |||||| |||| Sbjct 13687 AAGAAGAGGGGATTGATGCCTGGACTGACATTCTCAAACGAGTTGAT 13641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548519458739760