Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq21 134 2e-26 seq95 125 8e-24 seq258 87.8 2e-12 >seq21 Length=50189 Score = 134 bits (148), Expect = 2e-26 Identities = 296/441 (67%), Gaps = 2/441 (0%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 ||||| |||||||| ||||||||||| |||| | |||||| ||| || | | | | Sbjct 7927 CCAGTACCGATACCATCTGCACCATTGATCAACACCATCGGAACGGTTGGCATGAAATAG 7868 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 || || || | || |||||| || | ||| ||||||| | | ||| || Sbjct 7867 TCTGGTTCAATGCTCATACCGTCCTCGACTAAGTAGTTGAGCAATCCGTCGTCTGCAGGG 7808 Query 117272 TCGAATAT-GTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGC 117330 | ||| || | ||| | || | ||| || ||||| || ||||||| ||||| Sbjct 7807 TGGAAGATCGCTCTCG-TCATCCGTGGAAGATTTGTGAAGATATAACGAGCAGAAGCAGC 7749 Query 117331 ATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390 || || ||||| ||||| || ||||| || || || | || || || || || | || Sbjct 7748 GTCTTTACCACCTGCAAGTCGAGTACCAAACTGACCGTTGGGATCTAACAGATTGATATT 7689 Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450 ||| ||| ||||||||||| || ||| || || ||| | || || ||||| Sbjct 7688 GTTACTGCCGACAAAGTTTTGTGCTAAGCCGATGATGGTAGACGTCAAACTAGCTTCACC 7629 Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGA 117510 ||| ||||| || |||| ||||| ||||| || | |||||||| ||||| || || Sbjct 7628 ATGATGATATGCAGTCTTCTCCGAAACGTAACCGACAAGCTGAGCGACCTTAATTTCCTT 7569 Query 117511 CGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 || || || ||||| || || | | ||||| ||||||| || || ||||| || Sbjct 7568 GGTGAGATTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACCGTC 7509 Query 117571 CGCCACGTGAGGGATCGAACG 117591 |||||| || ||||| || Sbjct 7508 GGCCACGGACGGAATCGAGCG 7488 >seq95 Length=57217 Score = 125 bits (138), Expect = 8e-24 Identities = 313/468 (67%), Gaps = 8/468 (2%) Strand=Plus/Plus Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353 || ||||| || ||||| | || |||||||| ||||| || || || |||||| Sbjct 50536 CTTTTCAATGCCGGTACTCCCCGGCCCCAGATGTCATCATGCTTTCTCGTAGCCATGAAG 50595 Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413 ||||| || || || || |||||||| || |||||| ||||| || ||||||||| Sbjct 50596 GATGATTCCATTGATGGTATCTACGATACTCTCAAGACTTGTGCTCAGATCTCCAAGACC 50655 Query 53414 TCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGG 53472 | |||||||| ||| | ||| | | | || |||||||||| ||| | || || Sbjct 50656 GCTGGTGGTATTGGTCTTCACATTCAC-AATATCCGTGCGAAGGGCTCCTACATTGCCGG 50714 Query 53473 GACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCG 53532 || ||||| | | | || ||| | ||||||||||| | | || ||| || || Sbjct 50715 TACCAACGGTTACTCTAACGGTATCATTCCTATGCTCCGAGCTTATGACGCCACTGCTCG 50774 Query 53533 GTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTG 53592 ||||| |||| ||||| ||||| || | ||||||||||| || ||||| || Sbjct 50775 ATACGTTGACCAAGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCCTG 50834 Query 53593 GCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCG 53652 |||||| || | | || || | || | | ||| || ||| | || ||| | || Sbjct 50835 GCACGCTGATGTATTTGATTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTACG 50894 Query 53653 CTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGA 53711 ||||| || || ||| || || ||||| || || || |||||| || ||| || Sbjct 50895 AGCTCGTGATCTTTTCTAC-GCCCTCTGGATCCCCGATCTTTTCATG--AAGCGTGTCGA 50951 Query 53712 A--GGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757 | || | ||| ||| ||| ||||| || ||||| || || || Sbjct 50952 ATCCGATGGGGACTGGACCCTTATGTGTCCCGCTGAGTGTCCTGGGCT 50999 >seq258 Length=65905 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||| || || ||||| || || || || | || |||||||| | ||| | |||| Sbjct 13626 CCCTCATCCCTACTGATCAACTCGTTTGAGAATGTCAGTCCAGGCATCAATCCCCTCTTC 13685 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 |||||||| ||||| ||| ||||| ||| ||||| |||||||| || || ||||| Sbjct 13686 TTCAACCAGAAGATAGCAGCAAAGGACCCAGAAAAGAAAATGCCTTCCACGCATGCAAAA 13745 Query 74889 GCGACAAG 74896 || || || Sbjct 13746 GCCACCAG 13753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547210671484200