Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq21 134 2e-26
seq95 125 8e-24
seq258 87.8 2e-12
>seq21
Length=50189
Score = 134 bits (148), Expect = 2e-26
Identities = 296/441 (67%), Gaps = 2/441 (0%)
Strand=Plus/Minus
Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211
||||| |||||||| ||||||||||| |||| | |||||| ||| || | | | |
Sbjct 7927 CCAGTACCGATACCATCTGCACCATTGATCAACACCATCGGAACGGTTGGCATGAAATAG 7868
Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271
|| || || | || |||||| || | ||| ||||||| | | ||| ||
Sbjct 7867 TCTGGTTCAATGCTCATACCGTCCTCGACTAAGTAGTTGAGCAATCCGTCGTCTGCAGGG 7808
Query 117272 TCGAATAT-GTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGC 117330
| ||| || | ||| | || | ||| || ||||| || ||||||| |||||
Sbjct 7807 TGGAAGATCGCTCTCG-TCATCCGTGGAAGATTTGTGAAGATATAACGAGCAGAAGCAGC 7749
Query 117331 ATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390
|| || ||||| ||||| || ||||| || || || | || || || || || | ||
Sbjct 7748 GTCTTTACCACCTGCAAGTCGAGTACCAAACTGACCGTTGGGATCTAACAGATTGATATT 7689
Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450
||| ||| ||||||||||| || ||| || || ||| | || || |||||
Sbjct 7688 GTTACTGCCGACAAAGTTTTGTGCTAAGCCGATGATGGTAGACGTCAAACTAGCTTCACC 7629
Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGA 117510
||| ||||| || |||| ||||| ||||| || | |||||||| ||||| || ||
Sbjct 7628 ATGATGATATGCAGTCTTCTCCGAAACGTAACCGACAAGCTGAGCGACCTTAATTTCCTT 7569
Query 117511 CGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570
|| || || ||||| || || | | ||||| ||||||| || || ||||| ||
Sbjct 7568 GGTGAGATTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACCGTC 7509
Query 117571 CGCCACGTGAGGGATCGAACG 117591
|||||| || ||||| ||
Sbjct 7508 GGCCACGGACGGAATCGAGCG 7488
>seq95
Length=57217
Score = 125 bits (138), Expect = 8e-24
Identities = 313/468 (67%), Gaps = 8/468 (2%)
Strand=Plus/Plus
Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353
|| ||||| || ||||| | || |||||||| ||||| || || || ||||||
Sbjct 50536 CTTTTCAATGCCGGTACTCCCCGGCCCCAGATGTCATCATGCTTTCTCGTAGCCATGAAG 50595
Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413
||||| || || || || |||||||| || |||||| ||||| || |||||||||
Sbjct 50596 GATGATTCCATTGATGGTATCTACGATACTCTCAAGACTTGTGCTCAGATCTCCAAGACC 50655
Query 53414 TCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGG 53472
| |||||||| ||| | ||| | | | || |||||||||| ||| | || ||
Sbjct 50656 GCTGGTGGTATTGGTCTTCACATTCAC-AATATCCGTGCGAAGGGCTCCTACATTGCCGG 50714
Query 53473 GACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCG 53532
|| ||||| | | | || ||| | ||||||||||| | | || ||| || ||
Sbjct 50715 TACCAACGGTTACTCTAACGGTATCATTCCTATGCTCCGAGCTTATGACGCCACTGCTCG 50774
Query 53533 GTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTG 53592
||||| |||| ||||| ||||| || | ||||||||||| || ||||| ||
Sbjct 50775 ATACGTTGACCAAGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCCTG 50834
Query 53593 GCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCG 53652
|||||| || | | || || | || | | ||| || ||| | || ||| | ||
Sbjct 50835 GCACGCTGATGTATTTGATTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTACG 50894
Query 53653 CTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGA 53711
||||| || || ||| || || ||||| || || || |||||| || ||| ||
Sbjct 50895 AGCTCGTGATCTTTTCTAC-GCCCTCTGGATCCCCGATCTTTTCATG--AAGCGTGTCGA 50951
Query 53712 A--GGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757
| || | ||| ||| ||| ||||| || ||||| || || ||
Sbjct 50952 ATCCGATGGGGACTGGACCCTTATGTGTCCCGCTGAGTGTCCTGGGCT 50999
>seq258
Length=65905
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828
|| ||||| || || ||||| || || || || | || |||||||| | ||| | ||||
Sbjct 13626 CCCTCATCCCTACTGATCAACTCGTTTGAGAATGTCAGTCCAGGCATCAATCCCCTCTTC 13685
Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888
|||||||| ||||| ||| ||||| ||| ||||| |||||||| || || |||||
Sbjct 13686 TTCAACCAGAAGATAGCAGCAAAGGACCCAGAAAAGAAAATGCCTTCCACGCATGCAAAA 13745
Query 74889 GCGACAAG 74896
|| || ||
Sbjct 13746 GCCACCAG 13753
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547210671484200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |