Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq6 203 4e-47
seq95 188 8e-43
seq258 107 2e-18
seq152 100 3e-16
>seq6
Length=242052
Score = 203 bits (224), Expect = 4e-47
Identities = 181/227 (80%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| ||||||||||| || || ||||||||||||||||| |
Sbjct 169519 ATGCAGATTTTCGTCAAGACTCTTACCGGCAAAACCATCACTCTTGAGGTTGAGTCCTCT 169460
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||||| || |||||||||||||| || |||||||| ||||||
Sbjct 169459 GACACCATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGACCAG 169400
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| ||||||| || || |||||||| || || | || || || | ||||| ||
Sbjct 169399 CAGCGATTAATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGACTACAAC 169340
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| ||||| || ||||| ||||||||||| || |||||
Sbjct 169339 ATCCAAAAGGAGTCCACCCTCCATCTCGTCTTGCGTCTCCGAGGTGG 169293
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| ||||||||||| || || |||||||| || ||||| |
Sbjct 169009 ATGCAGATTTTCGTCAAGACTCTTACCGGCAAAACCATCACTCTTGAAGTCGAGTCCTCT 168950
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| | ||||| || ||||||||||||||||| || ||||| || |||
Sbjct 168949 GACACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGATCAG 168890
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| || | || ||||||||||| ||||| ||||||| |||||| || | || || ||
Sbjct 168889 CAACGATTGATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGATTACAAC 168830
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || |||||||| || ||| | ||||| || |||||
Sbjct 168829 ATCCAGAAGGAGTCAACTCTTCACCTTGTCCTCCGTCTCCGTGGTGG 168783
Score = 167 bits (184), Expect = 3e-36
Identities = 163/210 (78%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486
||||| || ||||| |||||||||||||| || || | |||| || | ||| | |||
Sbjct 168701 CTTACGGGTAAGACAATTACTCTTGAGGTCGAATCTAGCGATACAATCGACAATGTCAAG 168642
Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546
|| || || || |||||||| || || || || || ||||| || || |||||||| ||
Sbjct 168641 GCCAAGATCCAAGACAAGGAAGGTATCCCCCCCGATCAGCAACGACTCATTTTTGCCGGA 168582
Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606
|||||||| ||||||| ||||||||| | ||||| || | ||||| || |||||||||
Sbjct 168581 AAGCAACTAGAGGATGGTCGTACCCTTTCCGACTACAACATTCAAAAAGAGTCCACTCTT 168522
Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636
||||| ||| | ||||| || ||||| |||
Sbjct 168521 CATCTTGTCCTCCGTCTCCGTGGTGGTCAA 168492
Score = 129 bits (142), Expect = 7e-25
Identities = 127/164 (77%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| |||||||| |||||||||||||||||||| ||||| |
Sbjct 169291 ATGCAGATTTTCGTCAAGACCCTTACCGGAAAGACTATTACTCTTGAGGTCGAGTCTTCT 169232
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| | ||||| || |||||||| ||||| || |||||||| || |||
Sbjct 169231 GACACGATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAG 169172
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC 27569
|| || | || ||||| || ||||| | || |||| ||| ||
Sbjct 169171 CAACGATTGATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGAAC 169128
Score = 125 bits (138), Expect = 8e-24
Identities = 122/157 (78%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || ||||| |||||||| ||||| || || |||||
Sbjct 169798 ATGCAGATTTTCGTCAAGACCCTCACCGGTAAGACTATCACTCTCGAAGTGGAGTCTTCC 169739
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||| | || || |||||||||||||| || ||||| ||||||
Sbjct 169738 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 169679
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562
||||| | || |||||||||||||| || || ||||
Sbjct 169678 CAGCGATTGATCTTTGCTGGTAAGCAGCTTGAAGATG 169642
>seq95
Length=57217
Score = 188 bits (208), Expect = 8e-43
Identities = 723/1120 (65%), Gaps = 28/1120 (3%)
Strand=Plus/Minus
Query 80539 CCCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTAC 80598
||||||||||| | ||| | ||| || | || ||||| || || | | ||| ||
Sbjct 51641 CCCCACATGTCATACTGAAGGATACCTTTAGAAAGGGGAGAGCCTTCGTAAGACTCATAG 51582
Query 80599 GGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCA 80658
| |||| || || ||||| || || || ||| |||||||| |||||| |||
Sbjct 51581 GTACCCTGTTCCTCAGCAAGCTCGCATGAAGCCTCAAGCGCCGCGTGGTAAATGGTCTCG 51522
Query 80659 AAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATG 80718
|||| | || | | | |||| | |||||||| || || | ||||
Sbjct 51521 AAGATCTGGATATTGAGCTCCCTGGCCTCAAGAGAGTCGAACGGCATGCGAAGGGCCATG 51462
Query 80719 AACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCG 80777
|| ||||||| || || || || || | | | | || || |||||| |||| || | |
Sbjct 51461 AAAGCGTCAGCGAGACCTTGGACACCAAGGCCAACAGGTCGATGGCGCATGTTGGAGTTG 51402
Query 80778 CTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAAC 80837
| |||||| || | ||| || ||||| ||||| || ||||| | |||
Sbjct 51401 CG-GGCCTCAGGCACTGGATAGTAGTTACGGGTAATGACAGTGTCGAGGTTCTTGGCAAC 51343
Query 80838 AACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGG-----TTCCCCTTC-ACAAA 80891
|||| |||| ||||| || |||| |||||| | | ||| || || ||
Sbjct 51342 AACCTTGGTAATCTCATGCAGCTTCTTGAAGTCGTAGACGCGACGTTCAAGATCCACGAA 51283
Query 80892 TGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTC 80951
|| ||||| || || || || || || ||||| ||||| || | | | | ||||
Sbjct 51282 GGCAGGAAGAGCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAATACTC 51223
Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011
| ||||| || || | |||| |||||||| ||||| |||| || ||||| |||||
Sbjct 51222 CATAATTTCAGTACAGAGATTACTGGACTTAATGGTACCAAGGTGCTTTTGGTTGGACTT 51163
Query 81012 GGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAG 81071
|| |||| || ||||| || || ||||| ||| ||| ||||| ||| | || ||
Sbjct 51162 GGAGTTGGCGGCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCTCAAG 51103
Query 81072 GATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATA 81131
||| ||| ||||| || | || |||| || | || || | | | ||
Sbjct 51102 GATAGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTTCTCCCCTTACCCTGCCTCTCGTA 51043
Query 81132 CTTGGCGTAA-GCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGT 81190
| ||||| ||||| || || | | |||| | || | || | || |||||
Sbjct 51042 GCTCTCGTAAAGCTTC-TCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGACACTCAG 50984
Query 81191 TAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGA 81250
|| ||||| ||| |||||| ||| || ||| |||||||||| || ||||
Sbjct 50983 CGGGACACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGGGA 50924
Query 81251 TCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCG 81308
||||||||||| ||| || || || ||| || ||||||| | ||| ||||| |
Sbjct 50923 TCCAGAGGGCGTAGAAAAGATCACG--AGCTCGTACCTCCTCCTTACCATGGTTCTTCCT 50866
Query 81309 CAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC 81368
|| || | || || | | || || ||||| ||||| ||||| | ||||| | ||
Sbjct 50865 TAAGTCAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAAGGCACC 50806
Query 81369 CTTGCGACG------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAA 81422
|||| |||||| |||| ||||| || ||||| |||| | | | || |
Sbjct 50805 AG---GACGCTTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCGGAG 50749
Query 81423 CATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG 81482
|||||| |||||||| | || | |||||| ||||| | || || ||||| || ||
Sbjct 50748 CATAGGAATGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCACG 50689
Query 81483 CACCTTGCTGATTGA-AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGT 81541
| ||| ||| || |||||| || ||||| | ||| || ||||||||||| |
Sbjct 50688 GATATTG-TGAATGTGAAGACCAATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCT 50630
Query 81542 TCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAA-CAGCTT 81600
| | || || || || || || ||| ||| | |||||| | | | ||||| || |
Sbjct 50629 TGAGAGTATCGTAGATACCATCAATGGAATCATCCTTCATGGCTA-CGAGAAAGCATGAT 50571
Query 81601 GACATCTGAGGGCTTTTTGAGCCGGCATTGAACAG-TGTT 81639
|||||||| || | | ||||||||||| || ||||
Sbjct 50570 GACATCTGGGGCCGGGGAGTACCGGCATTGAAAAGCTGTT 50531
>seq258
Length=65905
Score = 107 bits (118), Expect = 2e-18
Identities = 101/129 (78%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785
|||||||| || |||||||| ||||||||||||||||| || | |||| |||||| |
Sbjct 13747 GCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCCTTTGCTGCTATCTTCTGGTTG 13688
Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845
|| ||| |||| ||||||| || ||| | || || |||||| ||||| | |||| |||
Sbjct 13687 AAGAAGAGGGGATTGATGCCTGGACTGACATTCTCAAACGAGTTGATCAGTAGGGATGAG 13628
Query 64846 GGGCTCCAC 64854
||| | |||
Sbjct 13627 GGGATGCAC 13619
>seq152
Length=36388
Score = 100 bits (110), Expect = 3e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486
|||||||| ||||| || || |||||||| ||||| || | ||| | ||| | |||
Sbjct 23210 CTTACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAG 23151
Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546
| || || |||||||||||||| || || || |||||||||||| | || || || ||
Sbjct 23150 TCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGTTTGATCTTCGCCGGA 23091
Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581
||||| || ||||| | | ||||| | |||||
Sbjct 23090 AAGCAGCTTGAGGACGGCAGGACCCTTTCTGACTA 23056
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570304846602480
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