Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq156 84.2 2e-11
>seq156
Length=42092
Score = 84.2 bits (92), Expect = 2e-11
Identities = 231/351 (66%), Gaps = 6/351 (2%)
Strand=Plus/Plus
Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280
|||| || |||||||| ||||| || | | | || || | | ||||| | ||||
Sbjct 33392 TTCCTCTTCTGACGACCAAACGCGTCTTCCTGCGCGGTGTTATTGCTGAGCTTTTATGGT 33451
Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACG 34340
|||| || || || |||||| |||||| || ||| || |||||||| |
Sbjct 33452 TCGTTTCTGGCTGTACCGACGCCAAGGTGCTCTCTAGCCAGGGTGTAGGAATCTGGGATG 33511
Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAG--CGGGGGTTCCCATCTCGGGAGG-AGGGCG 34397
| |||| ||| || ||||| ||| |||| | ||| | | ||| | || |
Sbjct 33512 GTAACGGAAACAAAGAGTTCCTGGAGAAGGTCGGGCTTGGCCA---CAGAAGGGAAGGTG 33568
Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCG 34457
|| |||| || || |||||||||||||||||||| ||||| || ||||| | ||
Sbjct 33569 ACCTGGGACCTGTATACGGGTTCCAGTGGAGACATTTTGGCGCCGAGTACACTGATGCCG 33628
Query 34458 AAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGC 34517
| | |||| ||| | |||| |||||| |||| |||||||||||| | ||
Sbjct 33629 ACGGTAACTACAAGGGCAAAGGAGTGGACCAATTGCAAAGGGTGATCGACACCATCAAAA 33688
Query 34518 GGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATC 34568
|| || ||||||| |||| | | | || |||||||| |||| ||
Sbjct 33689 ATAATCCGACTGACAGACGGATTATCTTATCGGCTTGGAACCCAAAGGGTC 33739
Score = 84.2 bits (92), Expect = 2e-11
Identities = 231/351 (66%), Gaps = 6/351 (2%)
Strand=Plus/Minus
Query 6777 GATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGG 6836
|| |||| |||||||| || | | | |||| ||||||| || || || | ||
Sbjct 33739 GACCCTTTGGGTTCCAAGCCGATAAGATAATCCGTCTGTCAGTCGGATTATTTTTGATGG 33680
Query 6837 TGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCC 6896
|||||||||| |||| |||||| |||| | ||| |||| | ||| |
Sbjct 33679 TGTCGATCACCCTTTGCAATTGGTCCACTCCTTTGCCCTTGTAGTTACCGTCGGCATCAG 33620
Query 6897 GATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCT-CC 6955
||||| || ||||| |||||||||||||||||||| || || |||| ||| || | ||
Sbjct 33619 TGTACTCGGCGCCAAAATGTCTCCACTGGAACCCGTATACAGGTCCCAGGTCACCTTCCC 33560
Query 6956 TCCCGAGATGGGAACCCCCG--CTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGA 7013
| | | ||| | |||| ||| ||||| || ||| |||| | | |||||||
Sbjct 33559 TTCTG---TGGCCAAGCCCGACCTTCTCCAGGAACTCTTTGTTTCCGTTACCATCCCAGA 33503
Query 7014 TCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCA 7073
| || ||| || |||||| |||||| || || || |||||||| | |
Sbjct 33502 TTCCTACACCCTGGCTAGAGAGCACCTTGGCGTCGGTACAGCCAGAAACGAACCATAAAA 33443
Query 7074 GCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA 7124
|||| | | || || | | | || ||||| |||||||| || ||||
Sbjct 33442 GCTCAGCAATAACACCGCGCAGGAAGACGCGTTTGGTCGTCAGAAGAGGAA 33392
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448258035044880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |