Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq156 84.2 2e-11 >seq156 Length=42092 Score = 84.2 bits (92), Expect = 2e-11 Identities = 231/351 (66%), Gaps = 6/351 (2%) Strand=Plus/Plus Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280 |||| || |||||||| ||||| || | | | || || | | ||||| | |||| Sbjct 33392 TTCCTCTTCTGACGACCAAACGCGTCTTCCTGCGCGGTGTTATTGCTGAGCTTTTATGGT 33451 Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACG 34340 |||| || || || |||||| |||||| || ||| || |||||||| | Sbjct 33452 TCGTTTCTGGCTGTACCGACGCCAAGGTGCTCTCTAGCCAGGGTGTAGGAATCTGGGATG 33511 Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAG--CGGGGGTTCCCATCTCGGGAGG-AGGGCG 34397 | |||| ||| || ||||| ||| |||| | ||| | | ||| | || | Sbjct 33512 GTAACGGAAACAAAGAGTTCCTGGAGAAGGTCGGGCTTGGCCA---CAGAAGGGAAGGTG 33568 Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCG 34457 || |||| || || |||||||||||||||||||| ||||| || ||||| | || Sbjct 33569 ACCTGGGACCTGTATACGGGTTCCAGTGGAGACATTTTGGCGCCGAGTACACTGATGCCG 33628 Query 34458 AAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGC 34517 | | |||| ||| | |||| |||||| |||| |||||||||||| | || Sbjct 33629 ACGGTAACTACAAGGGCAAAGGAGTGGACCAATTGCAAAGGGTGATCGACACCATCAAAA 33688 Query 34518 GGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATC 34568 || || ||||||| |||| | | | || |||||||| |||| || Sbjct 33689 ATAATCCGACTGACAGACGGATTATCTTATCGGCTTGGAACCCAAAGGGTC 33739 Score = 84.2 bits (92), Expect = 2e-11 Identities = 231/351 (66%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 6777 GATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGG 6836 || |||| |||||||| || | | | |||| ||||||| || || || | || Sbjct 33739 GACCCTTTGGGTTCCAAGCCGATAAGATAATCCGTCTGTCAGTCGGATTATTTTTGATGG 33680 Query 6837 TGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCC 6896 |||||||||| |||| |||||| |||| | ||| |||| | ||| | Sbjct 33679 TGTCGATCACCCTTTGCAATTGGTCCACTCCTTTGCCCTTGTAGTTACCGTCGGCATCAG 33620 Query 6897 GATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCT-CC 6955 ||||| || ||||| |||||||||||||||||||| || || |||| ||| || | || Sbjct 33619 TGTACTCGGCGCCAAAATGTCTCCACTGGAACCCGTATACAGGTCCCAGGTCACCTTCCC 33560 Query 6956 TCCCGAGATGGGAACCCCCG--CTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGA 7013 | | | ||| | |||| ||| ||||| || ||| |||| | | ||||||| Sbjct 33559 TTCTG---TGGCCAAGCCCGACCTTCTCCAGGAACTCTTTGTTTCCGTTACCATCCCAGA 33503 Query 7014 TCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCA 7073 | || ||| || |||||| |||||| || || || |||||||| | | Sbjct 33502 TTCCTACACCCTGGCTAGAGAGCACCTTGGCGTCGGTACAGCCAGAAACGAACCATAAAA 33443 Query 7074 GCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA 7124 |||| | | || || | | | || ||||| |||||||| || |||| Sbjct 33442 GCTCAGCAATAACACCGCGCAGGAAGACGCGTTTGGTCGTCAGAAGAGGAA 33392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448258035044880