Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq6 167 5e-36 seq152 120 7e-22 >seq6 Length=242052 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| || || || |||||||| ||||||||||| || || | ||| || | || ||||| Sbjct 169310 GACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCTTC 169369 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || ||||| || ||||| || | || || ||||||||||||| |||||||||||||| Sbjct 169370 AAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTG 169429 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||||| || || || ||||||||||||||| |||||||| |||||||| || || Sbjct 169430 AATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGACTCAACCTCAAGAGTGATGGTTTT 169489 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || |||||||| || || | |||||| Sbjct 169490 GCCGGTAAGAGTCTTGACGAAAATCTGCAT 169519 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||||||||| ||||| || |||||||| ||||| | ||| || | ||||| Sbjct 168798 AGGACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGACCATCC 168857 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || || ||||| | ||||| || |||||||| | || ||||||||| Sbjct 168858 TCAAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGAGGGATACCCTCCTTGTCC 168917 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||| ||||||||| || || || |||||||| || Sbjct 168918 TGAATCTTCGCCTTGACATTGTCGATCGTGTCAGAGGACTCGACTTCAAGAGTGATGGTT 168977 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 168978 TTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169009 Score = 138 bits (152), Expect = 3e-27 Identities = 136/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || || | ||| ||||| |||||||| |||||||| || || ||||| | || || ||| Sbjct 169623 TAGTCGGAAAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGG 169682 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 |||||||| | || ||||||||||||||||| || || || ||||||||||| || Sbjct 169683 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAA 169742 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||||||||| ||||| || ||||| ||||| || || | |||||| Sbjct 169743 GACTCCACTTCGAGAGTGATAGTCTTACCGGTGAGGGTCTTGACGAAAATCTGCAT 169798 Score = 136 bits (150), Expect = 9e-27 Identities = 148/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| |||||||||||||||||||| ||||| || || | |||||| | ||||| Sbjct 168511 AGGACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGACCATCC 168570 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || || || || || ||||| || || || || | ||||||||||| Sbjct 168571 TCTAGTTGCTTTCCGGCAAAAATGAGTCGTTGCTGATCGGGGGGGATACCTTCCTTGTCT 168630 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTCGAGAGTGATC 211079 |||||||| || || || ||||| || || ||| ||| ||||| ||||| || Sbjct 168631 TGGATCTTGGCCTTGACATTGTCGATTGTATCGCTAGA---TTCGACCTCAAGAGTAATT 168687 Query 211080 GTCTTTCCCGTGAGA 211094 ||||| ||||| ||| Sbjct 168688 GTCTTACCCGTAAGA 168702 >seq152 Length=36388 Score = 120 bits (132), Expect = 7e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || || | ||||||||| || || || |||||||| || |||||||| | || || ||| Sbjct 23056 TAGTCAGAAAGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGG 23115 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 ||||| || | || ||||||||||||||||| || || || ||||||||||| ||| Sbjct 23116 TCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAG 23175 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| || ||||| |||||||| || ||| Sbjct 23176 GACTCGACCTCAAGGGTGATGGTCTTTCCGGTAAGA 23211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159140430576335