Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq6 167 5e-36
seq152 120 7e-22
>seq6
Length=242052
Score = 167 bits (184), Expect = 5e-36
Identities = 163/210 (78%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964
||| || || || |||||||| ||||||||||| || || | ||| || | || |||||
Sbjct 169310 GACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCTTC 169369
Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024
|| ||||| || ||||| || | || || ||||||||||||| ||||||||||||||
Sbjct 169370 AAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTG 169429
Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084
||||| || || || ||||||||||||||| |||||||| |||||||| || ||
Sbjct 169430 AATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGACTCAACCTCAAGAGTGATGGTTTT 169489
Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || |||||||| || || | ||||||
Sbjct 169490 GCCGGTAAGAGTCTTGACGAAAATCTGCAT 169519
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||||||||||||||| ||||| || |||||||| ||||| | ||| || | |||||
Sbjct 168798 AGGACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGACCATCC 168857
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || || || || || ||||| | ||||| || |||||||| | || |||||||||
Sbjct 168858 TCAAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGAGGGATACCCTCCTTGTCC 168917
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || || || ||||| ||||||||| || || || |||||||| ||
Sbjct 168918 TGAATCTTCGCCTTGACATTGTCGATCGTGTCAGAGGACTCGACTTCAAGAGTGATGGTT 168977
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || |||||||| || || | ||||||
Sbjct 168978 TTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169009
Score = 138 bits (152), Expect = 3e-27
Identities = 136/176 (77%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998
|| || | ||| ||||| |||||||| |||||||| || || ||||| | || || |||
Sbjct 169623 TAGTCGGAAAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGG 169682
Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058
|||||||| | || ||||||||||||||||| || || || ||||||||||| ||
Sbjct 169683 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAA 169742
Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||||||||| ||||| || ||||| ||||| || || | ||||||
Sbjct 169743 GACTCCACTTCGAGAGTGATAGTCTTACCGGTGAGGGTCTTGACGAAAATCTGCAT 169798
Score = 136 bits (150), Expect = 9e-27
Identities = 148/195 (76%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| |||||||||||||||||||| ||||| || || | |||||| | |||||
Sbjct 168511 AGGACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGACCATCC 168570
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || ||||| || || || || || ||||| || || || || | |||||||||||
Sbjct 168571 TCTAGTTGCTTTCCGGCAAAAATGAGTCGTTGCTGATCGGGGGGGATACCTTCCTTGTCT 168630
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTCGAGAGTGATC 211079
|||||||| || || || ||||| || || ||| ||| ||||| ||||| ||
Sbjct 168631 TGGATCTTGGCCTTGACATTGTCGATTGTATCGCTAGA---TTCGACCTCAAGAGTAATT 168687
Query 211080 GTCTTTCCCGTGAGA 211094
||||| ||||| |||
Sbjct 168688 GTCTTACCCGTAAGA 168702
>seq152
Length=36388
Score = 120 bits (132), Expect = 7e-22
Identities = 120/156 (77%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998
|| || | ||||||||| || || || |||||||| || |||||||| | || || |||
Sbjct 23056 TAGTCAGAAAGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGG 23115
Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058
||||| || | || ||||||||||||||||| || || || ||||||||||| |||
Sbjct 23116 TCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAG 23175
Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| ||||| || ||||| |||||||| || |||
Sbjct 23176 GACTCGACCTCAAGGGTGATGGTCTTTCCGGTAAGA 23211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159140430576335
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |