Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq6 129 4e-25
>seq6
Length=242052
Score = 129 bits (142), Expect = 4e-25
Identities = 149/198 (75%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || || || || || ||||| |||||||| || ||||| ||| |
Sbjct 169519 ATGCAGATTTTCGTCAAGACTCTTACCGGCAAAACCATCACTCTTGAGGTTGAGTCCTCT 169460
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || ||| ||||| |||||| | || || || ||
Sbjct 169459 GACACCATCGACAATGTCAAGGC-GAAGATTCAGGACAAGGAAGGTATTCCTCCTGACCA 169401
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| ||||| || ||||| || ||||| ||||||| || ||| | ||| |||||
Sbjct 169400 GCAGCGATTAATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGACTACAA 169341
Query 23790 CATACAAAAAGAGTCCAC 23807
||| ||||| ||||||||
Sbjct 169340 CATCCAAAAGGAGTCCAC 169323
Score = 111 bits (122), Expect = 1e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || || || || || ||||| |||||||| ||||| || ||| |
Sbjct 169009 ATGCAGATTTTCGTCAAGACTCTTACCGGCAAAACCATCACTCTTGAAGTCGAGTCCTCT 168950
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | || ||||| || ||| | || || |||||
Sbjct 168949 GACACGATCGACAATGTCAAGGCGAAGA-TTCAGGACAAGGAGGGTATCCCTCCTGATCA 168891
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| || || || ||||| || |||||||| || || | || ||| | |||||||||
Sbjct 168890 GCAACGATTGATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGATTACAA 168831
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 168830 CATCCAGAAGGAGTCAAC 168813
Score = 86.0 bits (94), Expect = 4e-12
Identities = 128/179 (72%), Gaps = 2/179 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || ||||| || ||||| || || ||||| || || || || |
Sbjct 169291 ATGCAGATTTTCGTCAAGACCCTTACCGGAAAGACTATTACTCTTGAGGTCGAGTCTTCT 169232
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || ||| || || |||||| | || || |||||
Sbjct 169231 GACACGATCGACAATGTCAAGGC-CAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCA 169173
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
|| || || || |||||||| || || ||||||| | || ||||| |||||||
Sbjct 169172 GCAACGATTGATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGAACTTTGTCTGATTACA 169114
Score = 86.0 bits (94), Expect = 4e-12
Identities = 114/156 (73%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || |||||||| || || || |||||||||||||| || || |
Sbjct 169798 ATGCAGATTTTCGTCAAGACCCTCACCGGTAAGACTATCACTCTCGAAGTGGAGTCTTCC 169739
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || || ||||| || ||| | || || || ||
Sbjct 169738 GACACCATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCA 169680
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765
||||| || || ||||| || || || || |||||
Sbjct 169679 GCAGCGATTGATCTTTGCTGGTAAGCAGCTTGAAGA 169644
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338006390915732
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |