Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6 129 4e-25 >seq6 Length=242052 Score = 129 bits (142), Expect = 4e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || || ||||| |||||||| || ||||| ||| | Sbjct 169519 ATGCAGATTTTCGTCAAGACTCTTACCGGCAAAACCATCACTCTTGAGGTTGAGTCCTCT 169460 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || ||| ||||| |||||| | || || || || Sbjct 169459 GACACCATCGACAATGTCAAGGC-GAAGATTCAGGACAAGGAAGGTATTCCTCCTGACCA 169401 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| ||||| || ||||| || ||||| ||||||| || ||| | ||| ||||| Sbjct 169400 GCAGCGATTAATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGACTACAA 169341 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| |||||||| Sbjct 169340 CATCCAAAAGGAGTCCAC 169323 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || || ||||| |||||||| ||||| || ||| | Sbjct 169009 ATGCAGATTTTCGTCAAGACTCTTACCGGCAAAACCATCACTCTTGAAGTCGAGTCCTCT 168950 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || ||||| || ||| | || || ||||| Sbjct 168949 GACACGATCGACAATGTCAAGGCGAAGA-TTCAGGACAAGGAGGGTATCCCTCCTGATCA 168891 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || || || ||||| || |||||||| || || | || ||| | ||||||||| Sbjct 168890 GCAACGATTGATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGATTACAA 168831 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 168830 CATCCAGAAGGAGTCAAC 168813 Score = 86.0 bits (94), Expect = 4e-12 Identities = 128/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || ||||| || || ||||| || || || || | Sbjct 169291 ATGCAGATTTTCGTCAAGACCCTTACCGGAAAGACTATTACTCTTGAGGTCGAGTCTTCT 169232 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || ||| || || |||||| | || || ||||| Sbjct 169231 GACACGATCGACAATGTCAAGGC-CAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCA 169173 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 || || || || |||||||| || || ||||||| | || ||||| ||||||| Sbjct 169172 GCAACGATTGATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGAACTTTGTCTGATTACA 169114 Score = 86.0 bits (94), Expect = 4e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || || || |||||||||||||| || || | Sbjct 169798 ATGCAGATTTTCGTCAAGACCCTCACCGGTAAGACTATCACTCTCGAAGTGGAGTCTTCC 169739 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || ||| | || || || || Sbjct 169738 GACACCATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCA 169680 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765 ||||| || || ||||| || || || || ||||| Sbjct 169679 GCAGCGATTGATCTTTGCTGGTAAGCAGCTTGAAGA 169644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338006390915732