Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq95 100 4e-16 >seq95 Length=57217 Score = 100 bits (110), Expect = 4e-16 Identities = 287/439 (65%), Gaps = 2/439 (0%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| ||||| | || || | | ||||| || ||| || ||||| | | | Sbjct 51026 TCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGACACTCAGCGGGACACATAAGGGTC 50967 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 ||||| ||||| | || || ||||| || ||||| || ||||| || || || Sbjct 50966 CAGTCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGGGATCCAGAGGGCGTAGAAA 50907 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTT-TTAAGATCGAGAAACTCCAT 78103 ||||| || | || || || || || ||||| ||||| || | || || | Sbjct 50906 AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAATCAAA 50848 Query 78104 AATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCC 78163 | ||||| ||||| || || ||||| || || | | ||||| || || || || || Sbjct 50847 TACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTGCCACC 50788 Query 78164 CTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGA 78223 || || | |||| || ||| | |||| ||| | ||| ||||| ||||||||||| Sbjct 50787 TTGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCGGAGCATAGGAATGATACCGTTAGA 50728 Query 78224 TGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCC 78283 || || || || | ||| || || | || || ||||| |||| | || Sbjct 50727 GTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGACC 50668 Query 78284 TATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTC 78343 || || || || |||| || || |||| ||| || | |||||||||||||| || Sbjct 50667 AATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCTTGAGAGTATCGTAGATACCATC 50608 Query 78344 TATACTGTCATCCATCATG 78362 || |||||| ||||| Sbjct 50607 AATGGAATCATCCTTCATG 50589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694662035662560