Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq6 138 3e-27 >seq6 Length=242052 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||||||||| |||||||| ||||| || |||||||||||||||| | ||| | Sbjct 168791 GAGACGGAGGACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACG 168850 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || ||| || || ||||| | | ||||| || | | ||| || || Sbjct 168851 ACCATCCTCAAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGAGGGATACCCTC 168910 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || |||||| | || | |||| || ||| ||||||||||| Sbjct 168911 CTTGTCCTGAATCTTCGCCTTGACATTGTCGATCGTGTCAGAGGACTCGACTTCAAGAGT 168970 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || |||||||| ||||| | |||||| Sbjct 168971 GATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169009 Score = 138 bits (152), Expect = 3e-27 Identities = 159/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| ||||| || || ||||| |||||||||||||| |||| | ||||| || ||||| Sbjct 169310 GACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCTTC 169369 Query 151955 TAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || ||||| |||||||| || | | ||||||||| | | || |||||||| || Sbjct 169370 AAGTTGCTTT--CCGGCGAAAATTAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCC 169427 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || |||||| | || | | |||| || ||| || |||||||| || ||| Sbjct 169428 TGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGACTCAACCTCAAGAGTGATGGTT 169487 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || |||||||| ||||| | |||||| Sbjct 169488 TTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169519 Score = 109 bits (120), Expect = 1e-18 Identities = 146/201 (73%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||||||||||||||| ||||||||||| |||||||| |||| | || | Sbjct 168504 GAGACGGAGGACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGGAAAGGGTACG 168563 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| ||||| ||||| ||||| || || || | ||||| || | | ||| ||| Sbjct 168564 ACCATCCTCTAGTTGCTTT--CCGGCAAAAATGAGTCGTTGCTGATCGGGGGGGATACCT 168621 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || |||||| | || | | || | || || |||||| Sbjct 168622 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATTGTATCGCTAGATTCGACCTCAAGA 168681 Query 152064 GTAATAGTTTTGCCCGTGAGA 152084 ||||| || || ||||| ||| Sbjct 168682 GTAATTGTCTTACCCGTAAGA 168702 Score = 95.1 bits (104), Expect = 3e-14 Identities = 130/180 (72%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 151927 TGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTG 151984 ||||||| | ||||||| |||||||| | ||||| ||||| ||||| | | || Sbjct 169114 TGTAATCAGACAAAGTTCGACCATCTTCCAACTGCTTT--CCGGCAAAGATCAATCGTTG 169171 Query 151985 CTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044 ||| || | | || |||||||| || ||||| || |||||| | || | |||| Sbjct 169172 CTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTC 169231 Query 152045 TGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| ||| || |||||||||||||| || || || || ||||| ||||| | |||||| Sbjct 169232 AGAAGACTCGACCTCAAGAGTAATAGTCTTTCCGGTAAGGGTCTTGACGAAAATCTGCAT 169291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153809283786709