Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq6 172 1e-37 seq152 120 6e-22 >seq6 Length=242052 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | || || || ||||||||||| || | Sbjct 168782 ACCACCACGGAGACGGAGGACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCGGA 168841 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || |||||||| |||||||| || ||||||||||| ||||| || ||| || Sbjct 168842 AAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGAGG 168901 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| || ||||| || || || | ||||| ||||| || | ||||| Sbjct 168902 GATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATCGTGTCAGAGGACTCGAC 168961 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| |||||||| || || || || | |||||| ||||| |||||||| Sbjct 168962 TTCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169009 Score = 156 bits (172), Expect = 9e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || ||||| | ||| |||||||| ||||||||||| | Sbjct 168495 ACCACCACGGAGACGGAGGACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGGA 168554 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || |||||||||||||| || |||||||| || | ||||| || || || Sbjct 168555 AAGGGTACGACCATCCTCTAGTTGCTTTCCGGCAAAAATGAGTCGTTGCTGATCGGGGGG 168614 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| ||||||||||||||||| || || || | ||||| || || || |||||| Sbjct 168615 GATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATTGTATCGCTAGATTCGAC 168674 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || ||||| || ||||||||||| Sbjct 168675 CTCAAGAGTAATTGTCTTACCCGT 168698 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || | || ||||| | ||| || ||||||||||||||||| | Sbjct 169292 ACCACCTCGGAGACGCAAGACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGA 169351 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| || || ||||| || ||||| || || || || || |||||| || Sbjct 169352 AAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGG 169411 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| |||||||| || ||||| || || || | ||||| ||||| || | || || Sbjct 169412 AATACCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGACTCAAC 169471 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| || || || || | |||||| ||||| |||||||| Sbjct 169472 CTCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169519 Score = 150 bits (166), Expect = 4e-31 Identities = 140/178 (79%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| | ||| || | |||||| || || || || || ||||||||||| || || | Sbjct 169621 TGTAGTCGGAAAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCT 169680 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 ||||| || |||||||||||||| |||||||| | || || | ||||| ||||| | Sbjct 169681 GGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGG 169740 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || |||||||||||||| |||||||| || | ||||| ||||| |||||||| Sbjct 169741 AAGACTCCACTTCGAGAGTGATAGTCTTACCGGTGAGGGTCTTGACGAAAATCTGCAT 169798 Score = 123 bits (136), Expect = 5e-23 Identities = 134/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 |||| |||| | || || ||||| || | || || |||||||||||||| ||||| | Sbjct 169114 TGTAATCAGACAAAGTTCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCT 169173 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 | ||| |||||||| ||||| || || ||||| || || || | ||||| ||||| | Sbjct 169174 GATCAGGAGGAATACCTTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCAG 169233 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| || ||||| || ||||| || || | ||||| ||||| |||||||| Sbjct 169234 AAGACTCGACCTCAAGAGTAATAGTCTTTCCGGTAAGGGTCTTGACGAAAATCTGCAT 169291 >seq152 Length=36388 Score = 120 bits (132), Expect = 6e-22 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||||| ||| || | ||| ||||| || || || ||||| ||||||||||| || | Sbjct 23054 TGTAGTCAGAAAGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAAACGCTGCT 23113 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 ||||| || |||||||||||||| |||||||| | || || | ||||| ||||| | Sbjct 23114 GGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGG 23173 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | | ||||| || || ||||| ||||| || || Sbjct 23174 AGGACTCGACCTCAAGGGTGATGGTCTTTCCGGT 23207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046728752561466