Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq6 129 4e-25 seq152 91.5 1e-13 >seq6 Length=242052 Score = 129 bits (142), Expect = 4e-25 Identities = 172/235 (73%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || | ||| || || || || ||| |||||||||||||||||| || Sbjct 169289 CATACCACCTCGGAGACGCAAGACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTC 169348 Query 44167 GG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 || ||||| || |||| || || ||||| ||||| || || || |||||||| || Sbjct 169349 GGAAAGAGTT--CGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCA 169406 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGG 44282 | ||| | ||||||||| ||| |||||| ||| || ||| | |||||||| | || Sbjct 169407 GGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTGACATTGT--CGATGGTGTCAGAGG 169464 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| | || || || || || || || ||||| ||||| || ||||| Sbjct 169465 ACTCAACCTCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169519 Score = 111 bits (122), Expect = 1e-19 Identities = 120/157 (76%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || |||| |||||| |||||||||||||| || |||||||| | ||| | ||||||||| Sbjct 169137 TCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTA 169196 Query 44243 TCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 ||| ||||| ||| || ||| | || ||||| | || || ||||| | |||| Sbjct 169197 TCCTGAATCTTGGCCTTGACATTGT--CGATCGTGTCAGAAGACTCGACCTCAAGAGTAA 169254 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||| || |||||||| ||||| || ||||| Sbjct 169255 TAGTCTTTCCGGTAAGGGTCTTGACGAAAATCTGCAT 169291 Score = 111 bits (122), Expect = 1e-19 Identities = 123/162 (76%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || || |||||||| || ||||||||||| |||||||| || | ||| | ||| ||||| Sbjct 169644 TCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTG 169703 Query 44243 TCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 ||| ||||| ||| || ||| | |||||||||| || ||||| || | || | Sbjct 169704 TCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGAAGACTCCACTTCGAGAGTGA 169761 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGT 44342 | ||||| || ||||||||||| ||||| || |||||| ||| Sbjct 169762 TAGTCTTACCGGTGAGGGTCTTGACGAAAATCTGCATGGTGT 169803 Score = 109 bits (120), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| |||||||||||||||| || || | || || Sbjct 168801 ACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGACCATCCTCA 168860 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || || ||||||||||| || |||||||| | ||| | ||| ||||| ||| Sbjct 168861 AGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGAGGGATACCCTCCTTGTCCTGA 168920 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | || ||||| | ||| || || || | || || || | Sbjct 168921 ATCTTCGCCTTGACATTGT--CGATCGTGTCAGAGGACTCGACTTCAAGAGTGATGGTTT 168978 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || ||||| ||||| || ||||| Sbjct 168979 TGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169009 >seq152 Length=36388 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 |||| || |||||||| ||||| ||||||||||||||||| || | || | ||| |||| Sbjct 23075 CGTCCTCAAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGGATACCCTCCT 23134 Query 44241 TTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 | ||| ||||| ||| || ||| | |||||||||| ||| || ||||| | || Sbjct 23135 TGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGAGGACTCGACCTCAAGGGT 23192 Query 44299 AATCGTCTTTCCCGTGAG 44316 || |||||||| || || Sbjct 23193 GATGGTCTTTCCGGTAAG 23210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359986982228643