Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6 174 4e-38 seq152 123 6e-23 >seq6 Length=242052 Score = 174 bits (192), Expect = 4e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || || ||||| ||||| || ||||| || ||| ||| Sbjct 169516 CAGATTTTCGTCAAGACTCTTACCGGCAAAACCATCACTCTTGAGGTTGAGTCCTCTGAC 169457 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||||||||| ||||| || ||||| |||||||| Sbjct 169456 ACCATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGACCAGCAG 169397 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || ||||||||||| || || ||||| || | |||||| |||| || ||| || Sbjct 169396 CGATTAATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGACTACAACATC 169337 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || || || || ||||| || ||| | ||| || Sbjct 169336 CAAAAGGAGTCCACCCTCCATCTCGTCTTGCGTCTCCGA 169298 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || || ||||| ||||| || || || || ||| ||| Sbjct 169006 CAGATTTTCGTCAAGACTCTTACCGGCAAAACCATCACTCTTGAAGTCGAGTCCTCTGAC 168947 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| || || |||||||| || |||||| Sbjct 168946 ACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGATCAGCAA 168887 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| || || ||||| || || ||||| | |||||| ||||||| ||| || Sbjct 168886 CGATTGATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGATTACAACATC 168827 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || ||||| || || ||||| Sbjct 168826 CAGAAGGAGTCAACTCTTCACCTTGT 168801 Score = 145 bits (160), Expect = 2e-29 Identities = 136/173 (79%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || ||||| ||||| ||||| || ||| Sbjct 169795 CAGATTTTCGTCAAGACCCTCACCGGTAAGACTATCACTCTCGAAGTGGAGTCTTCCGAC 169736 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || |||||||| |||||||| Sbjct 169735 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAG 169676 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 ||| | ||||| || || || ||||| |||||||| ||||||||| |||| || Sbjct 169675 CGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTTTCCGACTA 169623 Score = 118 bits (130), Expect = 3e-21 Identities = 142/192 (74%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCATCGAGAACGT 177997 ||| || || || || || || || ||||| ||| ||| || || ||||| || || Sbjct 168702 TCTTACGGGTAAGACAATTACTCTTGAGGTCGAATCTAGC---GATACAATCGACAATGT 168646 Query 177998 CAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGC 178057 ||| ||||| || ||||| ||||| ||||| || || ||||||||||| || || || Sbjct 168645 CAAGGCCAAGATCCAAGACAAGGAAGGTATCCCCCCCGATCAGCAACGACTCATTTTTGC 168586 Query 178058 CGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAAC 178117 |||||| || || || ||||| | || ||| |||| || ||| | |||||||| || || Sbjct 168585 CGGAAAGCAACTAGAGGATGGTCGTACCCTTTCCGACTACAACATTCAAAAAGAGTCCAC 168526 Query 178118 ACTGCATCTTGT 178129 || |||||||| Sbjct 168525 TCTTCATCTTGT 168514 Score = 118 bits (130), Expect = 3e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || ||||| || || || || ||||| || || ||| Sbjct 169288 CAGATTTTCGTCAAGACCCTTACCGGAAAGACTATTACTCTTGAGGTCGAGTCTTCTGAC 169229 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||||||||| || ||||| || ||||| || |||||| Sbjct 169228 ACGATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAGCAA 169169 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 ||| | ||||| |||||||| ||| | |||||||| | ||| | | ||||| Sbjct 169168 CGATTGATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGAACTTTGTCTGATTA 169116 >seq152 Length=36388 Score = 123 bits (136), Expect = 6e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 ||| || ||||| || |||||||| ||||| || ||| ||||||||||| || ||||| Sbjct 23211 TCTTACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAATGTCAA 23152 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 ||||| |||||||| || || ||||| || |||||||| || | ||||||||||| Sbjct 23151 GTCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGTTTGATCTTCGCCGG 23092 Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 ||| ||||| || || || ||||| ||| | || || Sbjct 23091 AAAGCAGCTTGAGGACGGCAGGACCCTTTCTGACTA 23056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203719185634126