Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq6 120 3e-22
>seq6
Length=242052
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| || || ||||| || ||| |||||| || ||||| ||||||||
Sbjct 169293 CCACCTCGGAGACGCAAGACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAA 169352
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| || || ||||| |||||||| || | ||||| ||||| | |||
Sbjct 169353 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGA 169412
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||||||||| ||| | || || | || | | | ||||| ||||| ||
Sbjct 169413 ATACCTTCCTTGTCC-TGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGACTCAAC 169471
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || ||||| || || || ||||| ||||||||||||||
Sbjct 169472 CTCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169519
Score = 84.2 bits (92), Expect = 2e-11
Identities = 127/179 (71%), Gaps = 4/179 (2%)
Strand=Plus/Plus
Query 41687 TAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746
|||||||| || || | | || || |||||||| || || || |||| ||||| |||
Sbjct 169623 TAGTCGGAAAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGG 169682
Query 41747 TCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGC 41804
|| | || | | |||||||||| ||| || ||| || | ||| ||||||
Sbjct 169683 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATG--GTGTCGG 169740
Query 41805 TCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||||||| || | || || || ||||| || || ||||| |||||||||||||||
Sbjct 169741 AAGACTCCACTTCGAGAGTGATAGTCTTACCGGTGAGGGTCTTGACGAAAATCTGCATG 169799
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462299498314800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |