Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 45.1_202017-07-07] 841 sequences; 18,436,157 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq168 98.7 8e-16 >seq168 Length=163348 Score = 98.7 bits (108), Expect = 8e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | ||||| ||||| | ||||| | || || | |||||| || ||||| Sbjct 78342 CTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAA 78283 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTC 43036 ||||||||| || ||||| | || | |||||| || || ||| ||| | | || || Sbjct 78282 AATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTC-CTGAATCTTCGCCTTAACGT 78224 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 || | | ||||| | |||||| || | || ||||| |||||||| | ||| || | Sbjct 78223 TGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTTTCCGGTCAAAGTCTTGA 78164 Query 43097 CAAAAATTTGCAT 43109 |||| || ||||| Sbjct 78163 CAAAGATCTGCAT 78151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381365691080778