Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 45.1_202017-07-07] 841 sequences; 18,436,157 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq168 131 2e-25 >seq168 Length=163348 Score = 131 bits (144), Expect = 2e-25 Identities = 181/253 (72%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| || || ||| ||| |||||||| |||| | || | ||||| || || || || Sbjct 63430 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAG 63489 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 || ||||| || || ||||| |||||||| || || ||||| || || ||||| ||||| Sbjct 63490 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 63549 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATG 42240 ||| || || || || ||||| ||||| |||| ||| || ||| | | |||| Sbjct 63550 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 63609 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| ||||||| |||||||||||| | |||||| || || || || || | Sbjct 63610 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 63669 Query 42301 AAAGAGATAGTTT 42313 |||||| ||||| Sbjct 63670 AAAGAGGAAGTTT 63682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671132144649160