Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 45.1_202017-07-07] 841 sequences; 18,436,157 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq168 158 2e-33 seq312 96.9 5e-15 seq434 89.7 8e-13 >seq168 Length=163348 Score = 158 bits (174), Expect = 2e-33 Identities = 233/329 (71%), Gaps = 6/329 (2%) Strand=Plus/Minus Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---TCCG 125315 |||||| | ||| | || | |||||| || || |||| |||||| || | | Sbjct 63747 GAGAACATCCACGCCGAGACCTACTCTCTCCTCATCGACACCTACATTAAGGACACTGCT 63688 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 | ||| || | | |||||| |||| || ||||| | || | ||| || || ||||| Sbjct 63687 CGACGAAA---CTTCCTCTTTGACGCTATGGACACCATTCCTTGTATCCGAAAGAAGGCC 63631 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| |||| |||||| |||| | || |||| | || ||| |||| | || Sbjct 63630 GACTGGGCTCTTCGATGGATCTCTGACCAAAAATCTTGTTTCGGCGAGCGACTCATTGCT 63571 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 || || ||||| ||||| |||||||| || ||| ||| ||| ||||||| ||||| ||| Sbjct 63570 TTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCCATCTTCTGGCTTAAG 63511 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 ||||| || |||||||| || || || | ||||||| | || |||||||||||||| Sbjct 63510 AAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACGAGCTCATCTCTCGAGACGAGGGT 63451 Query 125556 CTACACTGTGACTTTGCCATTCTACTGTT 125584 || ||| ||||||||| ||| || || Sbjct 63450 CTCCACACCGACTTTGCCTGTCTCCTCTT 63422 >seq312 Length=129912 Score = 96.9 bits (106), Expect = 5e-15 Identities = 221/330 (67%), Gaps = 2/330 (1%) Strand=Plus/Plus Query 69884 GACAACAACCTACCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAG 69943 ||||||| ||| ||||| |||||||||| ||||| | |||||||| | ||| Sbjct 106153 GACAACACCCTTCCTCTCCTGACGACCAAACGCGTCTTCCTTCGCGGCGTCATTGCCGAG 106212 Query 69944 CTCTTGTGGATGATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACAC 70003 || |||||| | |||| || | ||| | ||||| | ||| | |||| ||| Sbjct 106213 CTTTTGTGGTTCGTTTCTGGTTGTACCGACGCCAAGGTGCTCTCTAGTCAGGGCGTAGGG 106272 Query 70004 ATTTGGAGCGGCAACAGTAGTCGAAGCGTTT-TGGATTCGCTCGGCTTCACCGACAGACA 70062 || ||| ||| ||| | || | ||| || |||| | |||| || | ||||| Sbjct 106273 ATCTGGGACGGTAACGGAAG-CAAAGAATTCCTGGAGAAGGTCGGGCTCGGCCACAGAAG 106331 Query 70063 AGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGT 70122 || || ||| |||| || |||||||| ||||||||||| || | || || |||| Sbjct 106332 GGAAGGTGATTTGGGACCTGTGTACGGGTTCCAGTGGAGACATTTTGGTGCCGAGTACAC 106391 Query 70123 AGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACAC 70182 || ||| ||||||| || | || || || ||| |||| | | || ||||| Sbjct 106392 TGATGCCGACGGAGACTATAAGGACAAAGGAGTCGACCAACTGCAAAGGGTAATCGACAC 106451 Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGAT 70212 |||||| ||||||||| || ||| |||| Sbjct 106452 CATCAAGAACAATCCAACTGACAGGCGGAT 106481 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 70301 AAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAAC 70360 ||| | || ||| | ||||||||||| | ||| | ||||||||||| || || ||| Sbjct 106647 AAACTTTCTTGCCTGATGTATCAGAGATCTTGTGACTTAGGCCTCGGTGTCCCATTCAAC 106706 Query 70361 ATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGC-CTGAAAGCGCA 70419 ||||| || | |||| || || |||||||| | |||||||| | ||| || | || Sbjct 106707 ATTGCGTCTTACGCATTGTTAACCCATATGATTGCCCTCATTACCGACACTG-AACCACA 106765 Query 70420 CGAGTTCGTAC-ACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAA 70478 ||||| | | ||| || || || || || ||||| | |||| | || ||||| | Sbjct 106766 TGAGTTTATCCTACA-GATGGGAGATGCGCATGTGTACAGAGATCATGTTGAACCATTGA 106824 Query 70479 AGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTG 70519 || |||| | ||| ||||||| ||| ||| |||||| || Sbjct 106825 AGACGCAATTGGAAAGGGAGCCTAGAGATTTCCCCAAGTTG 106865 >seq434 Length=110320 Score = 89.7 bits (98), Expect = 8e-13 Identities = 172/254 (68%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 ||||||||| || || || || || || || || || | ||| |||| | || ||| Sbjct 14609 CGATACGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCT 14550 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| || || |||||||| || || | | || ||| ||| || |||| | Sbjct 14549 TGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 14490 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 ||||| | || | || || || |||||| | | ||| | ||||||||||| ||| | Sbjct 14489 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAA 14430 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 || ||| | |||| || ||||| |||| | || || || || |||| | Sbjct 14429 TCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTAC 14370 Query 97104 GGCGAAGAGTTTGA 97117 |||||||| ||||| Sbjct 14369 GGCGAAGAATTTGA 14356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741051409615160