Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
45.1_202017-07-07] 841 sequences; 18,436,157 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq168 158 2e-33
seq312 96.9 5e-15
seq434 89.7 8e-13
>seq168
Length=163348
Score = 158 bits (174), Expect = 2e-33
Identities = 233/329 (71%), Gaps = 6/329 (2%)
Strand=Plus/Minus
Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---TCCG 125315
|||||| | ||| | || | |||||| || || |||| |||||| || | |
Sbjct 63747 GAGAACATCCACGCCGAGACCTACTCTCTCCTCATCGACACCTACATTAAGGACACTGCT 63688
Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375
| ||| || | | |||||| |||| || ||||| | || | ||| || || |||||
Sbjct 63687 CGACGAAA---CTTCCTCTTTGACGCTATGGACACCATTCCTTGTATCCGAAAGAAGGCC 63631
Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435
| |||| |||| |||||| |||| | || |||| | || ||| |||| | ||
Sbjct 63630 GACTGGGCTCTTCGATGGATCTCTGACCAAAAATCTTGTTTCGGCGAGCGACTCATTGCT 63571
Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495
|| || ||||| ||||| |||||||| || ||| ||| ||| ||||||| ||||| |||
Sbjct 63570 TTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCCATCTTCTGGCTTAAG 63511
Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555
||||| || |||||||| || || || | ||||||| | || ||||||||||||||
Sbjct 63510 AAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACGAGCTCATCTCTCGAGACGAGGGT 63451
Query 125556 CTACACTGTGACTTTGCCATTCTACTGTT 125584
|| ||| ||||||||| ||| || ||
Sbjct 63450 CTCCACACCGACTTTGCCTGTCTCCTCTT 63422
>seq312
Length=129912
Score = 96.9 bits (106), Expect = 5e-15
Identities = 221/330 (67%), Gaps = 2/330 (1%)
Strand=Plus/Plus
Query 69884 GACAACAACCTACCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAG 69943
||||||| ||| ||||| |||||||||| ||||| | |||||||| | |||
Sbjct 106153 GACAACACCCTTCCTCTCCTGACGACCAAACGCGTCTTCCTTCGCGGCGTCATTGCCGAG 106212
Query 69944 CTCTTGTGGATGATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACAC 70003
|| |||||| | |||| || | ||| | ||||| | ||| | |||| |||
Sbjct 106213 CTTTTGTGGTTCGTTTCTGGTTGTACCGACGCCAAGGTGCTCTCTAGTCAGGGCGTAGGG 106272
Query 70004 ATTTGGAGCGGCAACAGTAGTCGAAGCGTTT-TGGATTCGCTCGGCTTCACCGACAGACA 70062
|| ||| ||| ||| | || | ||| || |||| | |||| || | |||||
Sbjct 106273 ATCTGGGACGGTAACGGAAG-CAAAGAATTCCTGGAGAAGGTCGGGCTCGGCCACAGAAG 106331
Query 70063 AGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGT 70122
|| || ||| |||| || |||||||| ||||||||||| || | || || ||||
Sbjct 106332 GGAAGGTGATTTGGGACCTGTGTACGGGTTCCAGTGGAGACATTTTGGTGCCGAGTACAC 106391
Query 70123 AGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACAC 70182
|| ||| ||||||| || | || || || ||| |||| | | || |||||
Sbjct 106392 TGATGCCGACGGAGACTATAAGGACAAAGGAGTCGACCAACTGCAAAGGGTAATCGACAC 106451
Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGAT 70212
|||||| ||||||||| || ||| ||||
Sbjct 106452 CATCAAGAACAATCCAACTGACAGGCGGAT 106481
Score = 91.5 bits (100), Expect = 2e-13
Identities = 156/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 70301 AAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAAC 70360
||| | || ||| | ||||||||||| | ||| | ||||||||||| || || |||
Sbjct 106647 AAACTTTCTTGCCTGATGTATCAGAGATCTTGTGACTTAGGCCTCGGTGTCCCATTCAAC 106706
Query 70361 ATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGC-CTGAAAGCGCA 70419
||||| || | |||| || || |||||||| | |||||||| | ||| || | ||
Sbjct 106707 ATTGCGTCTTACGCATTGTTAACCCATATGATTGCCCTCATTACCGACACTG-AACCACA 106765
Query 70420 CGAGTTCGTAC-ACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAA 70478
||||| | | ||| || || || || || ||||| | |||| | || ||||| |
Sbjct 106766 TGAGTTTATCCTACA-GATGGGAGATGCGCATGTGTACAGAGATCATGTTGAACCATTGA 106824
Query 70479 AGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTG 70519
|| |||| | ||| ||||||| ||| ||| |||||| ||
Sbjct 106825 AGACGCAATTGGAAAGGGAGCCTAGAGATTTCCCCAAGTTG 106865
>seq434
Length=110320
Score = 89.7 bits (98), Expect = 8e-13
Identities = 172/254 (68%), Gaps = 0/254 (0%)
Strand=Plus/Minus
Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923
||||||||| || || || || || || || || || | ||| |||| | || |||
Sbjct 14609 CGATACGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCT 14550
Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983
|||||||| || || |||||||| || || | | || ||| ||| || |||| |
Sbjct 14549 TGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 14490
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043
||||| | || | || || || |||||| | | ||| | ||||||||||| ||| |
Sbjct 14489 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAA 14430
Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103
|| ||| | |||| || ||||| |||| | || || || || |||| |
Sbjct 14429 TCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTAC 14370
Query 97104 GGCGAAGAGTTTGA 97117
|||||||| |||||
Sbjct 14369 GGCGAAGAATTTGA 14356
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741051409615160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |