Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 45.1_202017-07-07] 841 sequences; 18,436,157 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq168 149 8e-31 seq434 104 3e-17 >seq168 Length=163348 Score = 149 bits (164), Expect = 8e-31 Identities = 185/253 (73%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| || || ||| ||| ||||||||||||| | || || ||||| || || || || Sbjct 63430 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAG 63489 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| || || ||||| |||||||| || ||||| ||||| || ||||| ||||| Sbjct 63490 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 63549 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 33479 ||| || || || |||||||| ||||| |||| ||| || ||| | | |||| Sbjct 63550 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 63609 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| ||||||| |||||||||||| | |||||| || || || || || | Sbjct 63610 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 63669 Query 33540 AAAGAGATAGTTT 33552 |||||| ||||| Sbjct 63670 AAAGAGGAAGTTT 63682 >seq434 Length=110320 Score = 104 bits (114), Expect = 3e-17 Identities = 293/442 (66%), Gaps = 6/442 (1%) Strand=Plus/Plus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 ||| || || || || |||| | | | | |||||| || || | |||||||| | | Sbjct 14355 TTCAAATTCTTCGCCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 14414 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63255 ||| || || || | || || ||||| || ||||| | ||||| || || || || Sbjct 14415 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 14474 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 63314 | ||||| | | || ||||| || || ||||| ||||| || | ||| | Sbjct 14475 A-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAGTCA 14532 Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374 | | ||||| ||||| || || | || ||||| | | ||||| || ||||| || Sbjct 14533 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 14592 Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434 || ||||| | ||||| ||| ||| | ||| ||| | ||| ||||| || ||||| Sbjct 14593 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 14652 Query 63435 GATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT-TGATAG 63493 || |||||||||||||| || ||| || | ||||| ||||| ||| ||| || Sbjct 14653 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGA-AG 14711 Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 ||| || || || || | || ||||| || || || | || || |||||||| Sbjct 14712 ACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACC 14771 Query 63554 CTCTATGCTATCATCGATCATG 63575 || ||| ||||| ||||| Sbjct 14772 ATCAATGGAGTCATCCTTCATG 14793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622940651267560