Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 45.1_202017-07-07] 841 sequences; 18,436,157 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq434 233 5e-56 seq32 89.7 1e-12 >seq434 Length=110320 Score = 233 bits (258), Expect = 5e-56 Identities = 651/996 (65%), Gaps = 12/996 (1%) Strand=Plus/Minus Query 363573 CAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGA 363632 ||| ||||| |||| || || ||||| || ||||| || | |||||||| || Sbjct 14841 CAACGCTGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAGGATGA 14782 Query 363633 TTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGG 363692 ||||| || ||||||| || || || |||| ||||||| || ||||||| ||| || Sbjct 14781 CTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACTGCCGG 14722 Query 363693 CGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGG 363752 || |||||| | || |||||| | ||||| || | |||||| ||| || Sbjct 14721 TGGTATTGGTCTTCACATTCACAATATCCGTGCGAAGGGCTCCTACATTGCCGGTACCAA 14662 Query 363753 GGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGT 363812 || ||||| || || | |||| ||||| || | | ||| || || | ||||| Sbjct 14661 TGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGATACGT 14602 Query 363813 CGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGC 363872 || || ||||| ||||| || || || || || ||||| |||||| || || Sbjct 14601 TGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTGGCACGC 14542 Query 363873 CGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACG 363932 ||| | ||||| || |||| | |||| ||| || || ||||| | || || || Sbjct 14541 TGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTACGAGCTCG 14482 Query 363933 TGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAA 363992 |||||| ||||| || || ||| | || || | ||| |||||||| || || | | | Sbjct 14481 TGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGG 14422 Query 363993 GAATTGGTCACTCTTTTG---CCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGA 364049 | ||||| |||||| || ||| | ||| || || || ||| |||| || | || || Sbjct 14421 GGATTGG--ACTCTTATGTGTCCCGC-CGAGTGCCCTGGACTTGCCGACGTTTACGGCGA 14365 Query 364050 CGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCC 364109 || | || || || || | || || | |||| |||| | || || || Sbjct 14364 AGAATTTGAAAAGCTTTATGAGAGCTACGAGAGGCAGGGCAAGGGAAGGAAAACTATCAA 14305 Query 364110 CGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATAT 364169 || |||||||| ||||| |||||| | || | || | ||||| || || ||||| Sbjct 14304 AGCCCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTCCCTTATAT 14245 Query 364170 GTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCA 364229 | ||||| ||| | |||| |||||||||||| ||||||||||||| || | Sbjct 14244 CTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCATCAAATC 14185 Query 364230 GAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289 || ||||| ||||| || || || || || | |||| || || ||| || ||||| Sbjct 14184 CAGTAACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTGCTGTCTGTAA 14125 Query 364290 CCTTGCGTCGATCGCGCTTCCGGCGTTTGTA------AAAGATGGTACTTTTGACCACCA 364343 ||||| || | || ||||| || || ||| || | | | |||| | | Sbjct 14124 TCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGACCTTGAACGTCGCGTCTATGACTTCAA 14065 Query 364344 GCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAA 364403 | || | || | ||| | || ||| || || || | || ||| | || Sbjct 14064 AAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGATACTGTAATCACCCGTAA 14005 Query 364404 TTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGG 364463 || |||||| | ||||||||| || || ||||| ||||| || |||||||||| Sbjct 14004 CTACTATCCAGTGCCTGAAGCCCGCAACTCCAACATGCGCCATCGACCTGTTGGTCTTGG 13945 Query 364464 TGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGC 364523 ||| ||||| || || |||| ||| ||| || ||| | || || || |||| || Sbjct 13944 TGTCCAGGGTCTTGCCGACGCTTTCATGGCCCTTCGCATGCCGTTCGACTCCGCTGAGGC 13885 Query 364524 TCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTA 364559 | | | || |||| ||||||| || || || || Sbjct 13884 TAGGGAACTCAATATCCAGATCTTCGAGACGATATA 13849 >seq32 Length=49190 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 22513 GTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCA 22572 || |||||||||||||||||||| | ||| ||||||||| ||| |||| || | | Sbjct 12545 GTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGGTTAAAGAAGAGAGGG 12604 Query 22573 ATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATAC 22631 | ||||| || || || |||||||| ||||| || ||| | |||||||| | ||||| Sbjct 12605 TTGATGCCTGGACTGACATTTTCAAACGAGTTGATCAGCAGGGATGAGGGGATGCATAC 12663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303339555957662