Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 45.1_202017-07-07] 841 sequences; 18,436,157 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq140 129 1e-24 seq79 107 4e-18 seq1 98.7 2e-15 >seq140 Length=11006 Score = 129 bits (142), Expect = 1e-24 Identities = 238/349 (68%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 218507 TCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGC 218566 ||||| || | || || || |||||||||| ||||| ||||| | |||| | Sbjct 4236 TCCCCATCTCCGATTTTGTCAACAAGGAGCTGATTCTCTTCTCCATGGCTGATAATATCC 4177 Query 218567 GTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCG 218626 | || ||||| |||| || || ||||| || ||||| ||| | ||||||| Sbjct 4176 GATCGATTCCATCTGTGGCCGACGGTCTCAAACCTGGTCAGCGAAAGGTTCTCTTTGGTT 4117 Query 218627 CATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCG 218686 |||||||| ||||| ||||||| |||||||||||| || | || || || || | Sbjct 4116 GTTTCAAGCGAAACCTCACCAAAGAAATCAAGGTCGCTCAGCTTGCCGGCTACGTTTCGG 4057 Query 218687 AAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCAC 218746 | | | | || || || ||||| ||| || ||||||| || | |||| Sbjct 4056 AGAAAACCGCATATCACCATGGTGAAGCCAGTTTGACTTCCACCATTGTCGGTTTAGCAC 3997 Query 218747 AGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTC 218806 | ||| || |||||||||||||| || ||||| |||||||| || |||||| ||| Sbjct 3996 AAAACTTCGTCGGCAGTAACAACATCAATCTGCTGGATCCCAACGGCCAATTTGGTACTC 3937 Query 218807 GTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAA 218855 |||| ||||| || || |||||||| | |||||||| ||||| Sbjct 3936 GTCTTGCAGGTGGTAAAGACGCAGCTTCTGCTCGTTATATCTTCACAAA 3888 >seq79 Length=187712 Score = 107 bits (118), Expect = 4e-18 Identities = 121/160 (76%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 280177 TTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGG 280236 |||| ||||| ||| | ||||| |||||||| | || |||| ||||| ||||| || Sbjct 33626 TTGGTCCCAACGGTTCCGGTAAATCTACCCTTGTTAAGCTCCTCACTGGTGAGACTGAGC 33685 Query 280237 CCA--CTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293 ||| || | |||| | | |||||||| || ||| || || | ||||||||| || | Sbjct 33686 CCAACCTTGGCGGTCAGGTCTGGAAGCACCCTAACTTGGTCATTGGTTACGTCGCCCAAC 33745 Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCC 280333 |||||||||||||||| || |||||||| ||| ||||| Sbjct 33746 ACGCTTTCCACCACATTGACAACCACCTTGACTCTACTCC 33785 Score = 104 bits (114), Expect = 5e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 |||||||| || || ||||||||||||||||| || || | || || ||||| | Sbjct 33145 GGTTCTCTTTCTGGCGGTTGGAAGATGAAGCTTGCTCTTGCCCGAGCTATTCTCTTCAAG 33204 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| |||| |||| || ||||| ||||||||| |||| ||||| | |||| Sbjct 33205 GCCGATATCCTCTTGCTCGACGAGCCTACCAACCACTTGGATGTTCTTAACGTTGACTGG 33264 Query 279819 CTAGTGTCCTACCTAACCAGTCTGA-AGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877 || | |||||| ||| || | ||| | | ||| ||||||||||||||||||| Sbjct 33265 CTGATCAACTACCTCACCTCCCTTACTCGATG-TACCTCCATCATTGTCTCTCACGACTC 33323 Query 279878 TGGCTTCCT 279886 || |||||| Sbjct 33324 TGACTTCCT 33332 Score = 86.0 bits (94), Expect = 1e-11 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 280719 GGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGC-AACACCC 280777 |||||||| || || |||||||| || | ||| |||| || ||| |||| || |||| Sbjct 34239 GGTCTTTCCGGTGGTCAGAAGGTTAAGGTCGTCCTCGGTGCCGCTACCTGGCGAAGACCC 34298 Query 280778 TCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAG 280823 ||| | ||| |||||||||||||||||||||||| ||||| ||| Sbjct 34299 -CACATCATCTGTCTCGACGAGCCTACCAACTATCTCGACCGAGAG 34343 >seq1 Length=398318 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/191 (72%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||| || | |||||||| ||||| ||||| |||||||| ||||| |||| || || ||| Sbjct 225284 GGTATCGTCGGACCCAACGGTGCCGGTAAATCTACCCTCATCAAGCTCCTCACCGGTGAG 225343 Query 280230 ACCCAGGCCACT---GAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286 || | | || || || || || ||||| ||| | || | | ||| ||| Sbjct 225344 ACT---GTCCCTCAAGAAGGTTCAGTGCACAAGCACCCCGCTCTTCGTGTCGGTTATGTC 225400 Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATT 280346 |||||||| || |||||||| ||| | | ||| |||||| |||| || || |||||| Sbjct 225401 GCTCAGCATGCGTTCCACCATATCAACCAGCACTTGGACAAGACTGCTGTGCAGTACATT 225460 Query 280347 CAGTGGCGCTA 280357 |||||||| || Sbjct 225461 CAGTGGCGATA 225471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027825724737281