Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 45.1_202017-07-07] 841 sequences; 18,436,157 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq434 165 1e-35 seq168 122 1e-22 seq140 105 8e-18 >seq434 Length=110320 Score = 165 bits (182), Expect = 1e-35 Identities = 710/1113 (64%), Gaps = 21/1113 (2%) Strand=Plus/Plus Query 114103 CCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGG 114162 |||||| || |||| |||||||| | ||| || || || || | | || || | Sbjct 13743 CCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGGT 13802 Query 114163 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAA 114222 || |||| || | |||| | |||||| || || ||||| || || ||||| || Sbjct 13803 ACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGAA 13862 Query 114223 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAA 114282 || | ||| | | || | ||||| |||| || |||| | || || || Sbjct 13863 GATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGAA 13922 Query 114283 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCG 114342 | || || ||||| |||||||| || |||| || ||||| | ||| || || || || Sbjct 13923 AGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTTGCG 13982 Query 114343 AGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC 114402 || ||| ||||| | || | ||| || ||| || || || || ||||| Sbjct 13983 GGCTTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTATCAAGGTTCTTTGTAACAAC 14042 Query 114403 CTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTT 114462 ||| || || || || ||||||| | | ||| | |||| || | || | Sbjct 14043 CTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGAAGGC 14102 Query 114463 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 114522 |||||| || | || || |||||||| |||| ||||| | || ||||| || Sbjct 14103 AGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTCCAT 14162 Query 114523 AATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT 114580 ||||| ||||| | || || | | | ||||| || | || |||||| || ||||| Sbjct 14163 GATTTCAGTACAGAGGTTACTGGATT--TGATGGTACCAAGGTGCTTTTGGTTGGACTTG 14220 Query 114581 GTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGA 114640 | ||| ||||||||||| || || || || ||||| ||||| | || ||| Sbjct 14221 GAGTTGGCAGCATCCTTGTAGCAGATATAAGGGACACCAGTCTCGGTTTGAGCCTCGAGG 14280 Query 114641 ATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGG-CGTTGGCTCGCCCCTCCTCCTCGT 114698 || || ||| | | || | |||| | ||| | || || |||| |||| |||| Sbjct 14281 ATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTC-TCGT 14338 Query 114699 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 114758 | | || || |||||| ||||| || | || | || || || || Sbjct 14339 AGCTCTCATAAAGCTTTTCAAATTCTTCGCCGTAAACGTCGGCAAGTCCAGGGCACTCGG 14398 Query 114759 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGA 114818 | || || | |||| ||| | ||| | || |||||||||||||| || || | || Sbjct 14399 CGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGA 14458 Query 114819 TCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 114878 ||||||| || |||| ||||| ||| || | || || | || || || | | Sbjct 14459 TCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTA 14518 Query 114879 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 114938 | || | ||||| | | ||| |||||||| || || || || | |||| | || Sbjct 14519 AGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACC-- 14576 Query 114939 TACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCA 114992 | |||| |||| | || | || || | |||||||| | | | || |||| Sbjct 14577 -AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCA 14635 Query 114993 TTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCT 115050 | |||||||| || | || | ||||| || || ||| | ||| | | | || | Sbjct 14636 TAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCT--TCGCACG 14693 Query 115051 GACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGT 115110 || || || ||||| | ||||||||| || || ||| ||||| || || || | | Sbjct 14694 GATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTT 14753 Query 115111 GAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGA 115170 |||| | ||||||| || || || |||||| |||| | || | |||||||| || Sbjct 14754 GAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGA 14813 Query 115171 CATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 115203 |||||| || | || |||||||||||||| || Sbjct 14814 CATTTGGGGTCGGGGAGTACCAGCGTTGAAAAG 14846 >seq168 Length=163348 Score = 122 bits (134), Expect = 1e-22 Identities = 121/154 (79%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||||||||||||||| || |||||||| || || |||||| || || Sbjct 63433 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACC 63492 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAACCCGAGAAGAAGA 126164 ||||||||||| |||||||| | |||||| || | | | ||| ||||| |||||||||| Sbjct 63493 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAA-GAACCAGAGAAGAAGA 63551 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTC 126198 | |||||||| || || |||| ||| ||||| Sbjct 63552 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTC 63585 >seq140 Length=11006 Score = 105 bits (116), Expect = 8e-18 Identities = 285/428 (67%), Gaps = 6/428 (1%) Strand=Plus/Plus Query 171727 ACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAA 171786 ||| || || ||||| || | || || | | |||||||||| || ||||| | | Sbjct 3737 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 3796 Query 171787 GTCTGGTTCAAT-CGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCG 171845 ||||||||||| |||| || ||| || |||| |||||||||| ||| || | Sbjct 3797 ATCTGGTTCAATGCGCATACC-ATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 3855 Query 171846 GATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGAC 171904 | | |||||| |||| ||||| ||| || ||||||||||| || | | || Sbjct 3856 GGTGGAAGATTGCCCGAGTCATCCGTGGA-AGGTTTGTGAAGATATAACGAGCAGAAGCT 3914 Query 171905 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATA 171964 || ||||| ||||| ||||| || |||||||| || || || || |||||||| Sbjct 3915 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 3974 Query 171965 TTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 172024 ||||| || | | ||| | || || |||||| || | | | ||||| Sbjct 3975 TTGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTGGAAGTCAAACTGGCTTCA 4034 Query 172025 CCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAA-CTGTGCCACCTTCATCTC 172083 || || || || || | || |||| || || |||| ||| ||| || ||||| || || Sbjct 4035 CCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTC 4093 Query 172084 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 172143 | ||||||| | ||| || || | | ||||||| ||| ||| ||||| || Sbjct 4094 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 4153 Query 172144 GTCGGCCA 172151 |||||||| Sbjct 4154 GTCGGCCA 4161 Score = 102 bits (112), Expect = 1e-16 Identities = 139/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 172777 AGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACC 172836 ||| ||||| ||||| | || || | ||||||||| || || || | |||||| || Sbjct 4887 AGCTTCGCGAACATTGAGAAGTTTACCCCTGAGAGGGAAAACGCCATACTCATCACGTCC 4946 Query 172837 AACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAG 172896 || || | |||||||| ||| ||||| | || || ||||| || ||||||| |||||| Sbjct 4947 GACAACTGCAAGACCAGAAACGGCGAGAGCTTTGGCAGAATCTCCTTCCGTCAGGATGAG 5006 Query 172897 CGTACACTT--TCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATA 172954 || || || | || || |||| || || ||||||||||| || | ||| |||| Sbjct 5007 AGTGCAGTTCTTGGAGTTTCGGCCG--CCAGCATTGTTCGCATCTTCAAGCTTTACAATA 5064 Query 172955 CCAGTAATTTTG 172966 |||| |||| || Sbjct 5065 CCAGAAATTCTG 5076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597347320320280