Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 45.1_202017-07-07] 841 sequences; 18,436,157 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq168 118 1e-21 >seq168 Length=163348 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | ||| || ||||| || || || |||||||||||||| |||||| Sbjct 77873 ATACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCG 77814 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||||||||| ||| | || | ||||||||| || || Sbjct 77813 GAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGG 77754 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || ||||| || || |||| || | ||| || || ||| Sbjct 77753 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCG 77694 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| ||||||||||| || ||||| || || |||||||| Sbjct 77693 ACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77644 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||||||||| || || ||| | || | ||| || Sbjct 78359 ACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCA 78300 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||| || || | |||||||||||||| || || ||||| ||||| || || ||| Sbjct 78299 AGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 78240 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 | | || | | | || | || | ||||| || ||||||||||| ||||| | || || Sbjct 78239 A-TCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTT 78181 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| || ||||| || ||||| Sbjct 78180 TCCGGTCAAAGTCTTGACAAAGATCTGCAT 78151 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||||||||||||||| || || || || || || ||||| || || |||| Sbjct 77495 ATCAATCGTTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTG 77436 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | ||||||||||||||| ||||| ||||| | || || ||||| ||||| || || Sbjct 77435 TCGATGGTGTCGGAAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACG 77376 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 77375 AAAATTTGCAT 77365 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | ||| || ||||| || || || |||||||||||||| |||||| Sbjct 78661 ATACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCG 78602 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||||||||| ||| | || | ||||||||| || || Sbjct 78601 GAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGG 78542 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || ||||| || || |||| || | || | ||| ||| || || Sbjct 78541 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTATCGCTCGATTC 78483 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 |||||| ||||| | || || || || ||| Sbjct 78482 GACTTCAAGAGTGATTGTCTTACCCGTAAGA 78452 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||| ||| ||||| ||| | ||||||||||| ||||| || || || || || || Sbjct 78027 ATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCCTT 77968 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 || ||||| || |||| || | |||||| || || || || || ||||| | Sbjct 77967 GTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCAAGAGTGAT 77908 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| ||||| || || ||||| ||||| Sbjct 77907 AGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 77872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451998448316360