Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
45.1_202017-07-07] 841 sequences; 18,436,157 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq434 181 1e-40
seq168 122 1e-22
seq140 114 2e-20
>seq434
Length=110320
Score = 181 bits (200), Expect = 1e-40
Identities = 717/1117 (64%), Gaps = 27/1117 (2%)
Strand=Plus/Plus
Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122
||||||| || |||| |||||||| | || || || || || | | ||||| |
Sbjct 13742 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 13801
Query 116123 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 116182
|| |||| || | |||| | |||||| || || ||||| || || ||||| |
Sbjct 13802 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 13861
Query 116183 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA---GACGGCACAAAA 116239
| || | ||| | | || | ||||| |||| || |||| | || || ||
Sbjct 13862 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCA--- 13918
Query 116240 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 116299
| || | || || ||||| |||||||| || |||| || ||||| | ||| || || |
Sbjct 13919 TGAAAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGT 13978
Query 116300 TTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 116359
| || || ||| ||||| | || | ||| || ||| || || || || |
Sbjct 13979 TGCGGGCTTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTATCAAGGTTCTTTGTAA 14038
Query 116360 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACAT 116419
||||||| || || || || ||||||| | | ||| | |||| || | ||
Sbjct 14039 CAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGA 14098
Query 116420 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACT 116479
| |||||| || | || || |||||||| |||| ||||| | || ||||
Sbjct 14099 AGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACT 14158
Query 116480 CTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 116537
| || ||||| ||||| | || || | | | ||||| || | || |||||| || ||
Sbjct 14159 CCATGATTTCAGTACAGAGGTTACTGGATT--TGATGGTACCAAGGTGCTTTTGGTTGGA 14216
Query 116538 CTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTT 116597
||| | ||| |||||||||||| ||||| || || ||||| ||||| | ||
Sbjct 14217 CTTGGAGTTGGCAGCATCCTTGTAGCAGATATAAGGGACACCAGTCTCGGTTTGAGCCTC 14276
Query 116598 GAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGG-CGTTGGCTCGCCCCTCCTCC 116655
||| || || ||| | | || | |||| | ||| | || || |||| ||||
Sbjct 14277 GAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTC- 14334
Query 116656 TCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCC 116715
||||| | || || ||||| ||||| || | | || | || || || |
Sbjct 14335 TCGTAGCTCTCATAAAGCTTTTCAAATTCTTCGCCGTAAACGTCGGCAAGTCCAGGGCAC 14394
Query 116716 TTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 116775
| | ||||| | |||| ||| | ||| | || || ||||||||||| || ||
Sbjct 14395 TCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCG 14454
Query 116776 GGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 116835
| ||||||||| || |||| ||||| ||| || | || || | || || ||
Sbjct 14455 GAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTC 14514
Query 116836 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 116895
| || || | ||||| | | ||| |||||||| || || || || | |||| |
Sbjct 14515 CTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCA 14574
Query 116896 CCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGA 116949
|| |||| |||| | || | || || | || || |||| | | ||
Sbjct 14575 CCAG---GACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGG 14631
Query 116950 AGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTGTTGG 117007
||||| |||||||| || | || | ||||| || || ||| | ||| | | | |
Sbjct 14632 AGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCT--TCG 14689
Query 117008 CTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACT 117067
| | || || ||| ||||| | ||||||||| || || ||| ||||| || || ||
Sbjct 14690 CACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGG 14749
Query 117068 CCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGC 117127
| ||||| | ||||||| ||||| || |||||| |||| | || | |||||||||
Sbjct 14750 TCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATG 14809
Query 117128 TCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 117164
|||||||| || | || |||||||||||||| ||
Sbjct 14810 ATGACATTTGGGGTCGGGGAGTACCAGCGTTGAAAAG 14846
>seq168
Length=163348
Score = 122 bits (134), Expect = 1e-22
Identities = 121/154 (79%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| || ||||||||||||||| || |||||||| || || |||||| |||||
Sbjct 63434 GCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACCA 63493
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGAT 127638
||||||||||| |||||||| | |||||| || | | | ||| || ||||||||||||||
Sbjct 63494 GGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAA-GAACCAGAGAAGAAGAT 63552
Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCG 127672
|||||||| || || |||| || ||||||
Sbjct 63553 ACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCG 63586
>seq140
Length=11006
Score = 114 bits (126), Expect = 2e-20
Identities = 287/428 (67%), Gaps = 6/428 (1%)
Strand=Plus/Plus
Query 175747 ACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAA 175806
||| || || ||||| || | || || | | |||||||||| || ||||| | |
Sbjct 3737 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 3796
Query 175807 GTCTGGTTCAAT-CGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865
||||||||||| |||| ||||| ||| |||| |||||||||| |||||| |
Sbjct 3797 ATCTGGTTCAATGCGCA-TACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 3855
Query 175866 GATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGAC 175924
| | |||||| |||| ||||| ||| || ||||||||||| || | | ||
Sbjct 3856 GGTGGAAGATTGCCCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGCT 3914
Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984
|| ||||| ||||| ||||| || |||||||| || || || || ||||||||
Sbjct 3915 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 3974
Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 176044
||||| ||| | ||| | || || |||||| || | | | |||||
Sbjct 3975 TTGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTGGAAGTCAAACTGGCTTCA 4034
Query 176045 CCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAA-CTGCGCCACCTTCATCTC 176103
|| || || || || | || |||| || || |||| ||| ||| || ||||| || ||
Sbjct 4035 CCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTC 4093
Query 176104 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 176163
| ||||||| | ||| || || | | ||||||| ||| ||| ||||| ||
Sbjct 4094 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 4153
Query 176164 GTCGGCCA 176171
||||||||
Sbjct 4154 GTCGGCCA 4161
Score = 98.7 bits (108), Expect = 1e-15
Identities = 138/192 (72%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 176797 AGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACC 176856
||| ||||| ||||| | || || | ||||||||| || || || | |||||| ||
Sbjct 4887 AGCTTCGCGAACATTGAGAAGTTTACCCCTGAGAGGGAAAACGCCATACTCATCACGTCC 4946
Query 176857 AACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAG 176916
|| || | ||||||| ||| ||||| | || || ||||| || ||||||| ||||||
Sbjct 4947 GACAACTGCAAGACCAGAAACGGCGAGAGCTTTGGCAGAATCTCCTTCCGTCAGGATGAG 5006
Query 176917 CGTACACTT--TCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATA 176974
|| || || | || || |||| || || ||||||||||| || | ||| ||||
Sbjct 5007 AGTGCAGTTCTTGGAGTTTCGGCCG--CCAGCATTGTTCGCATCTTCAAGCTTTACAATA 5064
Query 176975 CCAGTAATTTTG 176986
|||| |||| ||
Sbjct 5065 CCAGAAATTCTG 5076
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613500750505560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |