Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 45.1_202017-07-07] 841 sequences; 18,436,157 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq434 181 1e-40 seq168 122 1e-22 seq140 114 2e-20 >seq434 Length=110320 Score = 181 bits (200), Expect = 1e-40 Identities = 717/1117 (64%), Gaps = 27/1117 (2%) Strand=Plus/Plus Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122 ||||||| || |||| |||||||| | || || || || || | | ||||| | Sbjct 13742 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 13801 Query 116123 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 116182 || |||| || | |||| | |||||| || || ||||| || || ||||| | Sbjct 13802 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 13861 Query 116183 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA---GACGGCACAAAA 116239 | || | ||| | | || | ||||| |||| || |||| | || || || Sbjct 13862 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCA--- 13918 Query 116240 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 116299 | || | || || ||||| |||||||| || |||| || ||||| | ||| || || | Sbjct 13919 TGAAAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGT 13978 Query 116300 TTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 116359 | || || ||| ||||| | || | ||| || ||| || || || || | Sbjct 13979 TGCGGGCTTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTATCAAGGTTCTTTGTAA 14038 Query 116360 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACAT 116419 ||||||| || || || || ||||||| | | ||| | |||| || | || Sbjct 14039 CAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGA 14098 Query 116420 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACT 116479 | |||||| || | || || |||||||| |||| ||||| | || |||| Sbjct 14099 AGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACT 14158 Query 116480 CTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 116537 | || ||||| ||||| | || || | | | ||||| || | || |||||| || || Sbjct 14159 CCATGATTTCAGTACAGAGGTTACTGGATT--TGATGGTACCAAGGTGCTTTTGGTTGGA 14216 Query 116538 CTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTT 116597 ||| | ||| |||||||||||| ||||| || || ||||| ||||| | || Sbjct 14217 CTTGGAGTTGGCAGCATCCTTGTAGCAGATATAAGGGACACCAGTCTCGGTTTGAGCCTC 14276 Query 116598 GAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGG-CGTTGGCTCGCCCCTCCTCC 116655 ||| || || ||| | | || | |||| | ||| | || || |||| |||| Sbjct 14277 GAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTC- 14334 Query 116656 TCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCC 116715 ||||| | || || ||||| ||||| || | | || | || || || | Sbjct 14335 TCGTAGCTCTCATAAAGCTTTTCAAATTCTTCGCCGTAAACGTCGGCAAGTCCAGGGCAC 14394 Query 116716 TTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 116775 | | ||||| | |||| ||| | ||| | || || ||||||||||| || || Sbjct 14395 TCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCG 14454 Query 116776 GGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 116835 | ||||||||| || |||| ||||| ||| || | || || | || || || Sbjct 14455 GAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTC 14514 Query 116836 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 116895 | || || | ||||| | | ||| |||||||| || || || || | |||| | Sbjct 14515 CTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCA 14574 Query 116896 CCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGA 116949 || |||| |||| | || | || || | || || |||| | | || Sbjct 14575 CCAG---GACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGG 14631 Query 116950 AGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTGTTGG 117007 ||||| |||||||| || | || | ||||| || || ||| | ||| | | | | Sbjct 14632 AGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCT--TCG 14689 Query 117008 CTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACT 117067 | | || || ||| ||||| | ||||||||| || || ||| ||||| || || || Sbjct 14690 CACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGG 14749 Query 117068 CCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGC 117127 | ||||| | ||||||| ||||| || |||||| |||| | || | ||||||||| Sbjct 14750 TCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATG 14809 Query 117128 TCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 117164 |||||||| || | || |||||||||||||| || Sbjct 14810 ATGACATTTGGGGTCGGGGAGTACCAGCGTTGAAAAG 14846 >seq168 Length=163348 Score = 122 bits (134), Expect = 1e-22 Identities = 121/154 (79%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||||||||||||||| || |||||||| || || |||||| ||||| Sbjct 63434 GCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACCA 63493 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||||| |||||||| | |||||| || | | | ||| || |||||||||||||| Sbjct 63494 GGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAA-GAACCAGAGAAGAAGAT 63552 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCG 127672 |||||||| || || |||| || |||||| Sbjct 63553 ACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCG 63586 >seq140 Length=11006 Score = 114 bits (126), Expect = 2e-20 Identities = 287/428 (67%), Gaps = 6/428 (1%) Strand=Plus/Plus Query 175747 ACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAA 175806 ||| || || ||||| || | || || | | |||||||||| || ||||| | | Sbjct 3737 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 3796 Query 175807 GTCTGGTTCAAT-CGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 ||||||||||| |||| ||||| ||| |||| |||||||||| |||||| | Sbjct 3797 ATCTGGTTCAATGCGCA-TACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 3855 Query 175866 GATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGAC 175924 | | |||||| |||| ||||| ||| || ||||||||||| || | | || Sbjct 3856 GGTGGAAGATTGCCCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGCT 3914 Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984 || ||||| ||||| ||||| || |||||||| || || || || |||||||| Sbjct 3915 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 3974 Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 176044 ||||| ||| | ||| | || || |||||| || | | | ||||| Sbjct 3975 TTGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTGGAAGTCAAACTGGCTTCA 4034 Query 176045 CCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAA-CTGCGCCACCTTCATCTC 176103 || || || || || | || |||| || || |||| ||| ||| || ||||| || || Sbjct 4035 CCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTC 4093 Query 176104 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 176163 | ||||||| | ||| || || | | ||||||| ||| ||| ||||| || Sbjct 4094 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 4153 Query 176164 GTCGGCCA 176171 |||||||| Sbjct 4154 GTCGGCCA 4161 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 176797 AGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACC 176856 ||| ||||| ||||| | || || | ||||||||| || || || | |||||| || Sbjct 4887 AGCTTCGCGAACATTGAGAAGTTTACCCCTGAGAGGGAAAACGCCATACTCATCACGTCC 4946 Query 176857 AACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAG 176916 || || | ||||||| ||| ||||| | || || ||||| || ||||||| |||||| Sbjct 4947 GACAACTGCAAGACCAGAAACGGCGAGAGCTTTGGCAGAATCTCCTTCCGTCAGGATGAG 5006 Query 176917 CGTACACTT--TCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATA 176974 || || || | || || |||| || || ||||||||||| || | ||| |||| Sbjct 5007 AGTGCAGTTCTTGGAGTTTCGGCCG--CCAGCATTGTTCGCATCTTCAAGCTTTACAATA 5064 Query 176975 CCAGTAATTTTG 176986 |||| |||| || Sbjct 5065 CCAGAAATTCTG 5076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613500750505560