Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 45.1_202017-07-07] 841 sequences; 18,436,157 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq168 107 5e-18 >seq168 Length=163348 Score = 107 bits (118), Expect = 5e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || ||| || ||||| || ||||||||||||| ||||| || | | ||| Sbjct 78653 TCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGT 78594 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| || || ||||||||||||||||| || ||||| || || || || Sbjct 78593 TCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACC 78534 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || || ||||| ||| ||| |||| ||| || | | ||| || || | Sbjct 78533 CTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGATTCGACTTCAAG 78474 Query 199588 CGTGATCGTCTTACCCGTGAGA 199609 ||||| ||||||||||| ||| Sbjct 78473 AGTGATTGTCTTACCCGTAAGA 78452 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || ||| || ||||| || ||||||||||||| ||||| || | | ||| Sbjct 77865 TCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGT 77806 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| || || ||||||||||||||||| || ||||| || || || || Sbjct 77805 TCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACC 77746 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || || ||||| ||| || |||| ||| || | |||| || || | Sbjct 77745 CTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACTTCAAG 77686 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| ||||| || || ||||| Sbjct 77685 GGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTG 77647 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || || ||||||||||||| ||||||||| | | ||| | ||||| Sbjct 78362 AGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 78303 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || || || || || | || ||||| || ||| ||| ||||| ||| Sbjct 78302 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 78243 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| ||||| | | || || || | ||||| ||| Sbjct 78242 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTC 78183 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| || ||||| || || Sbjct 78182 TTTCCGGTCAAAGTCTTGACAAAGATCTG 78154 Score = 100 bits (110), Expect = 7e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 199452 TGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCT 199511 |||| |||| |||||| | ||||| ||||| ||||||||||||||||| | || || | Sbjct 78049 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTT 77990 Query 199512 GGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTG 199571 |||| ||| || || || ||||||||||| ||| || |||| |||||| | Sbjct 77989 GGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAG 77930 Query 199572 TTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||| || || | ||||| ||||| || || ||||| || || ||||| || Sbjct 77929 AGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTG 77875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178908896751347