Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 45.1_202017-07-07] 841 sequences; 18,436,157 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq409 149 8e-31 seq434 138 1e-27 seq159 123 3e-23 seq246 89.7 7e-13 seq16 86.0 8e-12 seq140 84.2 3e-11 >seq409 Length=1054 Score = 149 bits (164), Expect = 8e-31 Identities = 202/279 (72%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || ||||| || ||||| || |||||||| Sbjct 326 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGCCTTGACCTCGAAGATACCC 267 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | || | || ||||| || ||||||||||| ||||| || || | ||| Sbjct 266 TCCTCAATAGTCAAAAGAGAGACATCGAAAGTACCACCACCAAGGTCGAAGATCAAAACG 207 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | || | || ||||| || |||||||| |||||||| || || || || || Sbjct 206 TTCTTCTCACCCTCAGACTTCTTGTCAAGACCGTAAGCGATAGCAGCGGCAGTAGGCTCG 147 Query 7637 TTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || |||| || |||| | || || ||||| | | || || || || || || || Sbjct 146 TTGATGATACGGAGGACA-TCGAGACCGGCAATGGCACCAGCGTCCTTGGTAGCCTGACG 88 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGC 7734 ||| || ||||| |||||||| ||||| || || || || Sbjct 87 TTGAGAGTCGTTGAAGTAGGCGGGGACGGTGACAACGGC 49 >seq434 Length=110320 Score = 138 bits (152), Expect = 1e-27 Identities = 705/1115 (63%), Gaps = 23/1115 (2%) Strand=Plus/Plus Query 104870 CCCACATATCGAATTGAAGAATACCTTTACTAAACGGTGACCCCTTAAACGTTTCATAAG 104929 ||||||| ||| | ||||| ||||| ||| | || || || | | | |||||| | Sbjct 13742 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 13801 Query 104930 GACCGTACATTTCGGCAAGTTCACACGACGATTCGAGTGATGCGTGGTAGATAGTTTCGA 104989 ||| || ||||||||||| || |||| || || | |||||||| || || |||| Sbjct 13802 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 13861 Query 104990 ATATATCAATGTTGAGTTTTCTCGATTCTTCTGAACCGAATGTCATTCTTAACATGATAA 105049 | || | || ||||||| || | || | || |||| | ||| | | || | Sbjct 13862 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 13921 Query 105050 ACACGTCAGCGAGACCCTGAACACCAATACCGATGGGTCTGTGACGCATATTTGAACGTT 105109 | |||| || |||||||| ||||||| ||| | |||| || ||||| || || ||| Sbjct 13922 AAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGA--GTT 13979 Query 105110 TCCCGTTTTCGGT--TGGGTAAAAGTTTTTATCAATAACCTTGTTTAAGTTACGTGTAAC 105167 | | || || ||| || |||| || || | | | ||| |||||| Sbjct 13980 GCGGGCTTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTATCAAGGTTCTTTGTAAC 14039 Query 105168 CATTTTCGTAA-CACGATGTAACTCTTCATGGT--TAAACTCGTTCTTCTCGACATCAAC 105224 | || |||| | || || | || || || || || || ||| | || || Sbjct 14040 AACCTTGGTAATCTCG-TGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGG--TCTAC 14096 Query 105225 GTATTTTGGTAACGCGATTGATGCGAGATTACATACGGCGGTTTCTTCCTTATCCGTAAA 105284 | | || | || | || || |||||||| || || ||| || | | | | Sbjct 14097 GAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATA 14156 Query 105285 CTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGA 105344 ||||| ||||| ||||| | || ||||| || ||||||| ||| || ||||| || Sbjct 14157 CTCCATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGA 14216 Query 105345 CTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTT 105404 ||| || || || ||||| ||||| ||| || || || |||| | | Sbjct 14217 CTTGGAGTTGGCAGCATCCTTGTAGCAGATATAAGGGACACCAGTCTCGGTTTGAGCCTC 14276 Query 105405 AATAATTGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGATACCTTCAGATTC 105464 | || || ||||| || | ||| | | ||| || | | || | || Sbjct 14277 GAGGATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTC 14336 Query 105465 GTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTG 105524 ||| |||| ||||| | |||||| |||| ||||| ||||| | ||| || || Sbjct 14337 GTAGCTCTCATAAAGCTTTTCAAATTCTTCGCCGTAAACGTCGGCAAGTCCAGGGCACTC 14396 Query 105525 ATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGG 105584 | ||||| | | | ||||| ||||||||||| || || |||||||| | ||| | Sbjct 14397 GGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGA 14456 Query 105585 AATCCACATGGCTGAAAAGAGGTCTCGACACCTCG--CCTCTTCATCACCTTGATTCAAA 105642 ||||| | ||| | || || || ||| |||| |||| || | ||| || ||| Sbjct 14457 GATCCAGAGGGCGTAGAAAAGATCACGAG--CTCGTACCTCCTCCTTACCATGGTTCTTC 14514 Query 105643 CGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGAC 105702 | | || | || || | | ||| |||||||| || || | ||||| || | | Sbjct 14515 CTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCA 14574 Query 105703 CCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGT 105756 || | ||||| || |||||| || |||| || || | || || |||| Sbjct 14575 CC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGG 14631 Query 105757 AACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCA 105816 | ||| ||||| || || | ||| ||||| || || ||| | || || ||| Sbjct 14632 AGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCA 14691 Query 105817 CGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCT 105876 || | || ||||| ||| | |||||||| || || ||| ||| | ||||| Sbjct 14692 CGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTC 14751 Query 105877 TTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGAT 105936 || | |||||||| ||||| || || || ||||| | || | ||||| || ||| Sbjct 14752 TTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGAT 14811 Query 105937 GACATTTGTGGTCTGGGTGTACCAGCATTGAACAG 105971 |||||||| |||| ||| |||||||| ||||| || Sbjct 14812 GACATTTGGGGTCGGGGAGTACCAGCGTTGAAAAG 14846 >seq159 Length=7465 Score = 123 bits (136), Expect = 3e-23 Identities = 267/395 (68%), Gaps = 6/395 (2%) Strand=Plus/Plus Query 7331 GAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGG 7390 ||||| | |||||||| || |||||||| || | || || || || | ||||| | | Sbjct 3904 GAAGAGAGAGTTCGCTTAGCACGCTCACAAGCAGATCTCAATCGTCGCAAAGCACGGGCG 3963 Query 7391 TTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGT 7450 | | || || || ||| || | || ||||| | |||||| |||||| Sbjct 3964 TCGTCAGAGATGTCAAGCTTGGTCTTCCTCTTGAACTCAGCCTTGAAGTGCTCAAGGAGG 4023 Query 7451 CTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAG 7510 | ||||| || |||||||| | || || || || || || || ||||| ||| Sbjct 4024 TTGTTGTCGAAGTCCTCACCACCAAGATGAGTGTCACCAGCAGTGGCCTTGACAGAGAAG 4083 Query 7511 ATACCT--CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAA 7568 | ||| || | |||| | | | || ||||| || ||||||||||||| ||| || | Sbjct 4084 A--CCTTGCCCTGAATGGTAAGAAGAGAGACATCGAAAGTACCACCACCCAAGTCGAAGA 4141 Query 7569 TGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCG 7628 |||| ||||| || || || | |||| || |||||||| || ||||| || || | Sbjct 4142 TGAGGACGTTTCGCTCCTCCTCAGTCTTCTCGTCAAGACCGTAGGCAATAGCGGCAGCAG 4201 Query 7629 TTGGTTCATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTC 7687 | ||||| || |||||||| || || || || || ||||| | | || || || || Sbjct 4202 TAGGTTCGTTGATAATACGGAG-CACCTCAAGACCGGCAATGGCACCGGCGTCCTTAGTG 4260 Query 7688 GCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 || | || || || ||||| |||||||| || || Sbjct 4261 GCGAGACGCTGAGAGTCGTTGAAGTAGGCAGGAAC 4295 >seq246 Length=144501 Score = 89.7 bits (98), Expect = 7e-13 Identities = 140/200 (70%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 || ||||| | | ||| | ||||| ||| | || |||| ||| |||||||| Sbjct 200 ATGACCTTGAAAGGCCAGTGCTTCATGTCGGCCTGAACCTCAGCATCCTCAAACTTTCGG 259 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || | ||||| || || ||||| ||||| | ||||||||||| |||||||| Sbjct 260 CCAATCAATCGCTTGGCGTCGAAAACAGTGTTGTAAGGGTTCATGGCGACCTGGTTCTTG 319 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || ||||| ||||| | || || | || | || |||||||| || || || ||| Sbjct 320 GCAGCGTCACCGATCAATCGCTC---AGAGTCGTTGAAAGCGACGTAAGAGGGAGTGGTT 376 Query 8057 CGATTCCCTTGGTCGTTCGC 8076 || || || ||||||||||| Sbjct 377 CGGTTACCCTGGTCGTTCGC 396 >seq16 Length=55652 Score = 86.0 bits (94), Expect = 8e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135 ||||||||||||| |||||||||||||||||| | || || ||||| || || || || | Sbjct 456 CAATAATTTCTACCCGGTCGTTTTGCCAGACGGCAACACAAGAATAGGTAGTACCCAAGT 515 Query 8136 CAATACCGATTGCTTGAGTCATTTT 8160 | |||||||| |||| ||||| || Sbjct 516 CGATACCGATAGCTTTTGTCATGTT 540 >seq140 Length=11006 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 183338 GCGTCTTTACCACCCATGAGACGTGTACCAAATTGACCACATGGTTCGAGTAAATTAATA 183397 |||||||||||||| ||||| ||||||||||| || || || || | ||| || Sbjct 3915 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 3974 Query 183398 TTATTCGACCCCGTAAAATTATGTGCTAATTTTACAATTGTATCTGCCAAAGAGACTTCA 183457 || || || || || |||||||| ||||| || | |||| | ||||| Sbjct 3975 TTGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTGGAAGTCAAACTGGCTTCA 4034 Query 183458 CCGTGGTGATACGATGTTTTTTCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTC 183516 || |||||||| | ||||| ||||||||||| |||| | || || ||||| ||||| Sbjct 4035 CCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGATTTC 4093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635126123166440