Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
45.1_202017-07-07] 841 sequences; 18,436,157 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq434 185 1e-41
seq168 100 3e-16
seq140 95.1 1e-14
>seq434
Length=110320
Score = 185 bits (204), Expect = 1e-41
Identities = 683/1056 (65%), Gaps = 43/1056 (4%)
Strand=Plus/Plus
Query 109988 CCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAG 110047
||||||| | ||| |||| ||||| || ||||| || || || ||||| || || ||
Sbjct 13811 CCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGAAGATCTGGA 13870
Query 110048 CATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCG 110107
||| | | || ||| | ||||||| || | | | || || | || |
Sbjct 13871 TATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGAAAGCGTCGG 13930
Query 110108 CTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTT 110167
| |||||||| ||||| ||||||| || ||||| |||||| ||| || || ||
Sbjct 13931 CAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTTGCGGGC---TT 13987
Query 110168 CT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCG 110224
| || || || |||| ||| ||| || || || ||||| || ||| ||| |
Sbjct 13988 CAGGCACTGGATAGTAGTTACGGGTGATTACAGTATCAAGGTTCTTTGTAACAACCTTGG 14047
Query 110225 TGATTTCATGGAG---TTTGTCGTAATCGA----ACGTTTTCG-TCTCCTTATTGACATA 110276
| || || || || |||| || || || ||||| | ||| | | | ||
Sbjct 14048 TAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGAA--GGCA-- 14103
Query 110277 TTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTC 110336
|| ||||||| ||| |||||||| || |||| | || || | || ||
Sbjct 14104 ----GGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTC 14159
Query 110337 CAAAATTTCCGTACACAAGTTGGAACTC---TTAATGACACCCAAGTTCTTCTGATTCGA 110393
|| ||||| ||||| | ||| ||| || ||| ||| | || ||| || || ||
Sbjct 14160 CATGATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGA 14216
Query 110394 TTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTT 110453
||||||||| |||||||| ||| || || ||| |||||| || || || | ||
Sbjct 14217 CTTGGAGTTGGCAGCATCCTTGTAGCAGATATAAGGGACACCAGTCTCGGTTTGAGCCTC 14276
Query 110454 GAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTG-CGTTAGCGAGACCTTCCTCC 110511
||| ||||| ||| | | || | ||| || |||| | || | | ||| ||||
Sbjct 14277 GAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTC- 14334
Query 110512 TCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCC 110571
||||| | || | | |||||||| | ||||| || || | ||| || |
Sbjct 14335 TCGTAGCTCTCATAAAGCTTTTCAAATTCTTCGCCGTAAACGTCGGCAAGTCCAGGGCAC 14394
Query 110572 TTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCA 110631
| | ||||||| | || | ||||| ||| | || || | ||||||||| || ||
Sbjct 14395 TCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCG 14454
Query 110632 GGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGG 110691
| ||||| | || ||||||| ||||| || |||| || | ||| |||||
Sbjct 14455 GAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTC 14514
Query 110692 CGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGAT 110751
| || || | ||||| | | ||| | |||||| || || ||||||| |||| ||
Sbjct 14515 CTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCA 14574
Query 110752 CCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTG 110805
|| | |||| ||| | || | ||| || || |||||||| | | | | | |
Sbjct 14575 CC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGG 14631
Query 110806 AGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCA 110865
||||||||||| || || | ||| | |||||| ||||| ||| ||| || |||
Sbjct 14632 AGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCA 14691
Query 110866 CGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTC 110924
|| || | ||| || || | |||||||||||| || ||| || || ||||| ||
Sbjct 14692 CGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTC 14751
Query 110925 TGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGA 110984
| |||| ||| | || ||||||||||| || || |||| |||| | || ||||| ||
Sbjct 14752 T-TGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGA 14810
Query 110985 AGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAG 111020
||||| || || || || || || || ||||| ||
Sbjct 14811 TGACATTTGGGGTCGGGGAGTACCAGCGTTGAAAAG 14846
>seq168
Length=163348
Score = 100 bits (110), Expect = 3e-16
Identities = 210/308 (68%), Gaps = 19/308 (6%)
Strand=Plus/Plus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || || || || || || |||||||||||||| ||| |||| ||| ||
Sbjct 63433 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACC 63492
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614
||||||||| |||| ||||| ||||| ||||||| ||| ||||| ||||||||
Sbjct 63493 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAAGAT 63552
Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTT---GTC--- 119668
|||||||| || ||||| | || ||||| | ||| | ||| || |||
Sbjct 63553 ACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAA---CAAGATTTTTGGTCAGA 63609
Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTC-TATGCAGGGGACAGTTTGGATGGCTT 119727
|| ||| |||||||||| |||||| | || || || || | || | || || |
Sbjct 63610 GATCCATCGAAGAGCCCAGTCGGCCTT-CTTTCGGATACAAGGAATGGTGTCCATAGCGT 63668
Query 119728 CGAA----AAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAG 119783
| || ||||| | || |||| |||||||| || | || ||||| ||||
Sbjct 63669 CAAAGAGGAAGTTTCGTC----GAGCAGTGTCCTTAATGTAGGTGTCGATGAGGAGAGAG 63724
Query 119784 TAGGTCTC 119791
||||||||
Sbjct 63725 TAGGTCTC 63732
>seq140
Length=11006
Score = 95.1 bits (104), Expect = 1e-14
Identities = 285/433 (66%), Gaps = 14/433 (3%)
Strand=Plus/Plus
Query 167358 ACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAAA 167417
||| ||||| ||||| || | ||| || | ||| ||||| || | || |||||| || |
Sbjct 3737 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 3796
Query 167418 GTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTTTGGG 167477
|| ||||||||| |||||| || ||||||||||||| | | |||||| ||
Sbjct 3797 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 3856
Query 167478 ATCGAAGAGCTTTCGAG-CCTCCTTGGTAAGCTTCGTAAAGATGTACCTCGTCTGAGACG 167536
| ||||| |||| | ||| ||| ||| || || ||||| || | | || |
Sbjct 3857 GTGGAAGATTGCCCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGCTG 3915
Query 167537 CATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGT 167596
| || || ||||| || || ||||||||||| || || || || ||||||||||
Sbjct 3916 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 3975
Query 167597 TATTCGAC-CCCGTATAATCGTTG-GCCAACTTGACGATCGTTTCAGCGAGGGAAA---- 167650
| || || ||| || ||| || || ||| || || | || |||
Sbjct 3976 TGTT--ACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGT----GGAAGTCAAACTGG 4029
Query 167651 CTTCGCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCA 167710
|||| || ||||| || || | || || | || || | || | ||| || ||||| |
Sbjct 4030 CTTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGA 4089
Query 167711 TCTCATCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGA 167770
| || | |||| || | |||||| | | | |||||| || ||| ||||||||
Sbjct 4090 TTTCTTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGA 4149
Query 167771 GACCATCTGCCAC 167783
|||| || |||||
Sbjct 4150 GACCGTCGGCCAC 4162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588969808389800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |