Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 45.1_202017-07-07] 841 sequences; 18,436,157 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq434 185 1e-41 seq168 100 3e-16 seq140 95.1 1e-14 >seq434 Length=110320 Score = 185 bits (204), Expect = 1e-41 Identities = 683/1056 (65%), Gaps = 43/1056 (4%) Strand=Plus/Plus Query 109988 CCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAG 110047 ||||||| | ||| |||| ||||| || ||||| || || || ||||| || || || Sbjct 13811 CCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGAAGATCTGGA 13870 Query 110048 CATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCG 110107 ||| | | || ||| | ||||||| || | | | || || | || | Sbjct 13871 TATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGAAAGCGTCGG 13930 Query 110108 CTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTT 110167 | |||||||| ||||| ||||||| || ||||| |||||| ||| || || || Sbjct 13931 CAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTTGCGGGC---TT 13987 Query 110168 CT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCG 110224 | || || || |||| ||| ||| || || || ||||| || ||| ||| | Sbjct 13988 CAGGCACTGGATAGTAGTTACGGGTGATTACAGTATCAAGGTTCTTTGTAACAACCTTGG 14047 Query 110225 TGATTTCATGGAG---TTTGTCGTAATCGA----ACGTTTTCG-TCTCCTTATTGACATA 110276 | || || || || |||| || || || ||||| | ||| | | | || Sbjct 14048 TAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGAA--GGCA-- 14103 Query 110277 TTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTC 110336 || ||||||| ||| |||||||| || |||| | || || | || || Sbjct 14104 ----GGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTC 14159 Query 110337 CAAAATTTCCGTACACAAGTTGGAACTC---TTAATGACACCCAAGTTCTTCTGATTCGA 110393 || ||||| ||||| | ||| ||| || ||| ||| | || ||| || || || Sbjct 14160 CATGATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGA 14216 Query 110394 TTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTT 110453 ||||||||| |||||||| ||| || || ||| |||||| || || || | || Sbjct 14217 CTTGGAGTTGGCAGCATCCTTGTAGCAGATATAAGGGACACCAGTCTCGGTTTGAGCCTC 14276 Query 110454 GAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTG-CGTTAGCGAGACCTTCCTCC 110511 ||| ||||| ||| | | || | ||| || |||| | || | | ||| |||| Sbjct 14277 GAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTC- 14334 Query 110512 TCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCC 110571 ||||| | || | | |||||||| | ||||| || || | ||| || | Sbjct 14335 TCGTAGCTCTCATAAAGCTTTTCAAATTCTTCGCCGTAAACGTCGGCAAGTCCAGGGCAC 14394 Query 110572 TTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCA 110631 | | ||||||| | || | ||||| ||| | || || | ||||||||| || || Sbjct 14395 TCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCG 14454 Query 110632 GGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGG 110691 | ||||| | || ||||||| ||||| || |||| || | ||| ||||| Sbjct 14455 GAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTC 14514 Query 110692 CGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGAT 110751 | || || | ||||| | | ||| | |||||| || || ||||||| |||| || Sbjct 14515 CTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCA 14574 Query 110752 CCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTG 110805 || | |||| ||| | || | ||| || || |||||||| | | | | | | Sbjct 14575 CC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGG 14631 Query 110806 AGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCA 110865 ||||||||||| || || | ||| | |||||| ||||| ||| ||| || ||| Sbjct 14632 AGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCA 14691 Query 110866 CGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTC 110924 || || | ||| || || | |||||||||||| || ||| || || ||||| || Sbjct 14692 CGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTC 14751 Query 110925 TGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGA 110984 | |||| ||| | || ||||||||||| || || |||| |||| | || ||||| || Sbjct 14752 T-TGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGA 14810 Query 110985 AGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAG 111020 ||||| || || || || || || || ||||| || Sbjct 14811 TGACATTTGGGGTCGGGGAGTACCAGCGTTGAAAAG 14846 >seq168 Length=163348 Score = 100 bits (110), Expect = 3e-16 Identities = 210/308 (68%), Gaps = 19/308 (6%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || || || |||||||||||||| ||| |||| ||| || Sbjct 63433 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACC 63492 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| |||| ||||| ||||| ||||||| ||| ||||| |||||||| Sbjct 63493 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAAGAT 63552 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTT---GTC--- 119668 |||||||| || ||||| | || ||||| | ||| | ||| || ||| Sbjct 63553 ACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAA---CAAGATTTTTGGTCAGA 63609 Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTC-TATGCAGGGGACAGTTTGGATGGCTT 119727 || ||| |||||||||| |||||| | || || || || | || | || || | Sbjct 63610 GATCCATCGAAGAGCCCAGTCGGCCTT-CTTTCGGATACAAGGAATGGTGTCCATAGCGT 63668 Query 119728 CGAA----AAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAG 119783 | || ||||| | || |||| |||||||| || | || ||||| |||| Sbjct 63669 CAAAGAGGAAGTTTCGTC----GAGCAGTGTCCTTAATGTAGGTGTCGATGAGGAGAGAG 63724 Query 119784 TAGGTCTC 119791 |||||||| Sbjct 63725 TAGGTCTC 63732 >seq140 Length=11006 Score = 95.1 bits (104), Expect = 1e-14 Identities = 285/433 (66%), Gaps = 14/433 (3%) Strand=Plus/Plus Query 167358 ACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAAA 167417 ||| ||||| ||||| || | ||| || | ||| ||||| || | || |||||| || | Sbjct 3737 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 3796 Query 167418 GTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTTTGGG 167477 || ||||||||| |||||| || ||||||||||||| | | |||||| || Sbjct 3797 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 3856 Query 167478 ATCGAAGAGCTTTCGAG-CCTCCTTGGTAAGCTTCGTAAAGATGTACCTCGTCTGAGACG 167536 | ||||| |||| | ||| ||| ||| || || ||||| || | | || | Sbjct 3857 GTGGAAGATTGCCCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGCTG 3915 Query 167537 CATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGT 167596 | || || ||||| || || ||||||||||| || || || || |||||||||| Sbjct 3916 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 3975 Query 167597 TATTCGAC-CCCGTATAATCGTTG-GCCAACTTGACGATCGTTTCAGCGAGGGAAA---- 167650 | || || ||| || ||| || || ||| || || | || ||| Sbjct 3976 TGTT--ACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGT----GGAAGTCAAACTGG 4029 Query 167651 CTTCGCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCA 167710 |||| || ||||| || || | || || | || || | || | ||| || ||||| | Sbjct 4030 CTTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGA 4089 Query 167711 TCTCATCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGA 167770 | || | |||| || | |||||| | | | |||||| || ||| |||||||| Sbjct 4090 TTTCTTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGA 4149 Query 167771 GACCATCTGCCAC 167783 |||| || ||||| Sbjct 4150 GACCGTCGGCCAC 4162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588969808389800