Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
45.1_202017-07-07] 841 sequences; 18,436,157 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq168 123 2e-22
seq16 113 4e-19
seq7 96.9 3e-14
seq159 87.8 1e-11
>seq168
Length=163348
Score = 123 bits (136), Expect = 2e-22
Identities = 164/223 (74%), Gaps = 6/223 (3%)
Strand=Plus/Minus
Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313
|||||| | || ||||| |||||| || ||||| ||||||||||| | ||||||
Sbjct 77862 GAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGG--ATATTGTAATCGGAAAGAGTT 77805
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
| ||||||||||||||||||||| || || |||| |||||||||||| || || ||
Sbjct 77804 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 77745
Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAG 563432
|| || ||||| || || || || || || ||||||| | | || ||| ||
Sbjct 77744 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGAC-TTCAAG 77686
Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|||| ||||| || || || ||||| ||||| |||||||||
Sbjct 77685 GGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCATA 77643
Score = 109 bits (120), Expect = 4e-18
Identities = 160/222 (72%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314
|||||||| ||||| ||||||||| || ||||| || ||||| || | ||||| |
Sbjct 78368 AGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGG--ATGTTGTAGTCGGAAAGAGTAC 78311
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
||| ||||||||||| || |||||||| | || |||||||||||||||||| ||||
Sbjct 78310 GACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTT 78251
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433
| || || ||||| || || || || || || |||| || | | ||| |||
Sbjct 78250 CCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAG-ACGACTCGACTTCAAGA 78192
Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|| | ||| || || || | ||| || || || || ||||||
Sbjct 78191 GTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATA 78150
Score = 102 bits (112), Expect = 7e-16
Identities = 106/137 (77%), Gaps = 4/137 (3%)
Strand=Plus/Minus
Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313
|||||| | || ||||| |||||| || ||||| ||||||||||| | ||||||
Sbjct 78650 GAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGG--ATATTGTAATCGGAAAGAGTT 78593
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
| ||||||||||||||||||||| || || |||| |||||||||||| || || ||
Sbjct 78592 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 78533
Query 563374 TCTTTATCTTGAATTTT 563390
|| || ||||| || ||
Sbjct 78532 TCCTTGTCTTGGATCTT 78516
Score = 87.8 bits (96), Expect = 1e-11
Identities = 130/182 (71%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 563294 TATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTT 563353
|| |||| || | ||||| || ||||||||| || || || ||||| || | || ||
Sbjct 77545 TACTGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTT 77486
Query 563354 GCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTAT 563413
|||| |||||||| || || || || ||||| || || || || || || || |
Sbjct 77485 GCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGT 77426
Query 563414 CAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGC 563472
| | || | || ||| ||||| | ||| ||||| || ||||| || ||||||||||||
Sbjct 77425 CGGAA-GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGC 77367
Query 563473 AT 563474
||
Sbjct 77366 AT 77365
>seq16
Length=55652
Score = 113 bits (124), Expect = 4e-19
Identities = 143/192 (74%), Gaps = 6/192 (3%)
Strand=Plus/Minus
Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAAC-A 550122
||||| ||||| || || |||| || ||||| |||||| |||||| || |||||| |
Sbjct 400 GCCAACGATCAGGGCAATCGAACAACACCATCATATGTTGCTTTCAATGATTCTGAACGA 341
Query 550123 TTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATACTATTTTT 550180
||| | |||||||| || || |||||| || || |||||| ||| ||| ||||
Sbjct 340 CTTA-TCGGTGATGCCGCGAAGAATCAAGTTGCAATG--AATCCTTACAACACTGTTTTC 284
Query 550181 GATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAG 550240
|||||||| || || || || | | ||||| ||| | |||||||| || ||||||
Sbjct 283 GATGCTAAGCGGTTGATCGGCCGTAAGTTTAACGATGCCGAAGTTCAGGCCGACATGAAG 224
Query 550241 CATTGGCCTTTC 550252
||||||||||||
Sbjct 223 CATTGGCCTTTC 212
>seq7
Length=59247
Score = 96.9 bits (106), Expect = 3e-14
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 390855 ATTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCT 390914
|||||| || ||||||||||| | || || | ||| || | | ||| || ||| ||||
Sbjct 23927 ATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTCT 23986
Query 390915 TTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGC 390974
||||||||||||||| || ||||| || | || |||| ||| | |||||||| || |
Sbjct 23987 TTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 24046
Query 390975 CATAACTTGGAAGAAAAATTC 390995
|||| | ||||| | |||||
Sbjct 24047 CATAGCGTGGAACCAGAATTC 24067
>seq159
Length=7465
Score = 87.8 bits (96), Expect = 1e-11
Identities = 130/184 (71%), Gaps = 3/184 (2%)
Strand=Plus/Minus
Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462
|||| || || || || || || || ||||| || |||| || ||||| || || ||
Sbjct 4304 GTAAAAAGCGTTCCTGCCTACTTCAACGACTCTCAGCGTCTCGCCACTAAGGACGCCGGT 4245
Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522
||||| || ||| | || || ||||||||||| |||||||||||||| || ||||
Sbjct 4244 GCCATTGCCGGTCTTGAGGTGCTCCGTATTATCAACGAACCTACTGCTGCCGCTATTGCC 4185
Query 550523 TATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT---GTGGA 550579
|| || ||||| | | | ||| | || | || || |||||||| || | ||||
Sbjct 4184 TACGGTCTTGACGAGAAGACTGAGGAGGAGCGAAACGTCCTCATCTTCGACTTGGGTGGT 4125
Query 550580 GGTA 550583
||||
Sbjct 4124 GGTA 4121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029251524127090
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |