Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
45.1_202017-07-07] 841 sequences; 18,436,157 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq140 131 5e-25
seq434 107 6e-18
seq168 102 2e-16
seq7 93.3 1e-13
>seq140
Length=11006
Score = 131 bits (144), Expect = 5e-25
Identities = 263/384 (68%), Gaps = 12/384 (3%)
Strand=Plus/Plus
Query 59989 ACCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAATA 60048
||||||||| ||||| | || |||||||| | | ||| || | | || || ||||
Sbjct 3737 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 3796
Query 60049 AACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAA--AACCTTGTCGTCAATT 60106
| |||| |||| | |||||| || ||||| ||| | |||| ||||| |
Sbjct 3797 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTA-GTTGAGCAACC----CGTCATCT 3851
Query 60107 TCGGGA---AATATAGCCCGAGTAATCT-TGGATAATTGTGTGAAAATATACCTCTCGGA 60162
| || || || |||||||| ||| |||| || |||||| ||||| | | ||
Sbjct 3852 GCAGGGTGGAAGATTGCCCGAGTCATCCGTGGAAGGTT-TGTGAAGATATAACGAGCAGA 3910
Query 60163 TGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATT 60222
|||||||| || ||||| |||||| || |||||||| ||||| || | | |||||
Sbjct 3911 AGCTGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATT 3970
Query 60223 AATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGC 60282
||||||||| ||| ||||| ||||| || | ||| ||||| | | | ||||||||
Sbjct 3971 GATGTTGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTGGAAGTCAAACTGGC 4030
Query 60283 TTCACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAAT 60342
|||||| || |||||| | | | || ||||| || || | || ||||| || ||
Sbjct 4031 TTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGAT 4090
Query 60343 TTCGGAGTGGAGTTTTTTCTTGAA 60366
||| | ||| ||| ||||||
Sbjct 4091 TTCTTTGGTGAGGTTTCGCTTGAA 4114
>seq434
Length=110320
Score = 107 bits (118), Expect = 6e-18
Identities = 305/466 (65%), Gaps = 7/466 (2%)
Strand=Plus/Plus
Query 155859 AGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCT 155916
||||||||||||| |||| || | || | |||| || | |||| |||||||
Sbjct 14383 AGTCCAGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCAT--CGGATTCGACACGCT 14440
Query 155917 CCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCAT 155976
||| || | ||| ||| | || |||||||| || | || | |||||| |
Sbjct 14441 TCATGAAAAGATCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCT 14500
Query 155977 CGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGAT 156036
|| || ||||||| || || | ||| || | ||||| || ||||| ||||
Sbjct 14501 TACCATGGTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGAT 14560
Query 156037 ACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTAT 156093
| || || || |||| | |||| ||||| ||||| || || ||||| || |
Sbjct 14561 AGATGGCGAAGGCACCAGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGT 14620
Query 156094 TGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCG 156153
| | | | ||||||||||| || || ||||| |||||||| ||| ||| | |
Sbjct 14621 CGTAAGCTCGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGG 14680
Query 156154 AACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTT 156213
| || | || | ||| ||||| || || ||||||||||| | || || || |
Sbjct 14681 AGCCCTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCT 14740
Query 156214 GAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTA 156273
|||| || ||| | ||||| | | ||||| ||||| || ||||| | ||| | | |
Sbjct 14741 GAGCACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGA 14800
Query 156274 GATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAG 156319
| |||| || | ||| ||||| || || ||||||||||| ||
Sbjct 14801 GGAAGCATGATGACATTTGGGGTCGGGGAGTACCAGCGTTGAAAAG 14846
>seq168
Length=163348
Score = 102 bits (112), Expect = 2e-16
Identities = 155/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
|||||||||| |||||| | ||||||||| || ||||||| ||| | |
Sbjct 63653 TTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAAATCTT 63594
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
|||| | || ||| |||||||||||| || ||||| || || ||| |||| | |
Sbjct 63593 GTTTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTT 63534
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| || || || |||||||| ||||| ||| | | ||||| || || |||||||
Sbjct 63533 TCGCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACG 63474
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
| || || || | ||||||| || |||||||| ||||||
Sbjct 63473 AGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCC 63433
>seq7
Length=59247
Score = 93.3 bits (102), Expect = 1e-13
Identities = 200/288 (69%), Gaps = 12/288 (4%)
Strand=Plus/Plus
Query 302537 TATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGAC 302596
||||||| || || ||||||| ||| | | | ||| ||||| |||| || | |
Sbjct 23926 TATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTC 23985
Query 302597 GCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCAC 302656
|| ||||||||||| || || || ||||| |||||||| | ||| | |||||||
Sbjct 23986 TTTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCAC 24045
Query 302657 CCATAGCATGGAAGAATAGCTCTTCCG--GTCGTAGCCCCCCAATAAAGGAGCTCTCAAC 302714
||||||| ||||| | | |||| | ||| | || | ||| | | ||| | |||||
Sbjct 24046 CCATAGCGTGGAACCAGAATTCTTGTGGAGTC-AAACCACGCAA-ATACGAGTTTTCAAC 24103
Query 302715 GAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT- 302770
|||||| || | |||||| || | ||||| ||| | |||||||| | | || ||
Sbjct 24104 GAAACCTCGAGACTCGGGTCCGTAGTCGTC--TCTT-GAGAAGTGTGGTAATGACCGGTG 24160
Query 302771 TCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818
|| | | ||| | | |||||| ||||| |||||| ||| || ||||
Sbjct 24161 TCGGA-ATCCGAACGAGATACGTTTTCCTTCAACGAACTGTTGACCCA 24207
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471801740705417
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |