Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 45.1_202017-07-07] 841 sequences; 18,436,157 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq168 93.3 5e-13 seq457 89.7 6e-12 >seq168 Length=163348 Score = 93.3 bits (102), Expect = 5e-13 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776 |||||||||||||| |||||| | ||| ||||||| |||||| | || ||||||| Sbjct 63112 CTCGAAAAAGTTGGCCTTGCCTTGGAGAGAGATCATCTCCATGAAGTCAAAGGGGTTGGC 63171 Query 868777 CGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGAT 868836 | || | ||| ||| || | | | || || |||||||| |||||||| || Sbjct 63172 AGAGTTCCAAATCTTCTCGTTGCCCAAAGCAACAAGAAGACGGTCGGCAACAAACTCAAT 63231 Query 868837 GTACTGGCACATGAGGCCGGCGTTCATGCCGATGAG 868872 ||| ||||||||||| ||||||||| ||||| || Sbjct 63232 GTATTGGCACATGAGCTTGGCGTTCATACCGATAAG 63267 >seq457 Length=108919 Score = 89.7 bits (98), Expect = 6e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417 || || || || || ||||||||||||||| | ||||||||||| ||||||| || || Sbjct 103108 CCCCGACCTTCCCATGCCGACTACACCTACCTTGCCAAGTACGGTGTCAAGGCCTCTTCT 103049 Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477 ||||| || || |||| || || ||||| || || || || || |||||| | || Sbjct 103048 GGCGGTGGTCGTGCGTCCGCGCGTGAGACTATCGGACGAGTTGCGGCTGGCGCGATTGCG 102989 Query 18478 GAGAAAT 18484 ||||||| Sbjct 102988 GAGAAAT 102982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107070183601597