Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
45.1_202017-07-07] 841 sequences; 18,436,157 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq168 93.3 5e-13
seq457 89.7 6e-12
>seq168
Length=163348
Score = 93.3 bits (102), Expect = 5e-13
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776
|||||||||||||| |||||| | ||| ||||||| |||||| | || |||||||
Sbjct 63112 CTCGAAAAAGTTGGCCTTGCCTTGGAGAGAGATCATCTCCATGAAGTCAAAGGGGTTGGC 63171
Query 868777 CGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGAT 868836
| || | ||| ||| || | | | || || |||||||| |||||||| ||
Sbjct 63172 AGAGTTCCAAATCTTCTCGTTGCCCAAAGCAACAAGAAGACGGTCGGCAACAAACTCAAT 63231
Query 868837 GTACTGGCACATGAGGCCGGCGTTCATGCCGATGAG 868872
||| ||||||||||| ||||||||| ||||| ||
Sbjct 63232 GTATTGGCACATGAGCTTGGCGTTCATACCGATAAG 63267
>seq457
Length=108919
Score = 89.7 bits (98), Expect = 6e-12
Identities = 96/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417
|| || || || || ||||||||||||||| | ||||||||||| ||||||| || ||
Sbjct 103108 CCCCGACCTTCCCATGCCGACTACACCTACCTTGCCAAGTACGGTGTCAAGGCCTCTTCT 103049
Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477
||||| || || |||| || || ||||| || || || || || |||||| | ||
Sbjct 103048 GGCGGTGGTCGTGCGTCCGCGCGTGAGACTATCGGACGAGTTGCGGCTGGCGCGATTGCG 102989
Query 18478 GAGAAAT 18484
|||||||
Sbjct 102988 GAGAAAT 102982
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107070183601597
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |