Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
45.1_202017-07-07] 841 sequences; 18,436,157 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq823 96.9 3e-15
seq168 87.8 2e-12
seq92 86.0 6e-12
>seq823
Length=80675
Score = 96.9 bits (106), Expect = 3e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
||||||||||||||| || ||| | || | ||||||||||| || ||||| || |||||
Sbjct 15208 GTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCCTCCTT 15149
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
||| |||||| ||||| | || | ||||||| || ||| || |||| |||||
Sbjct 15148 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGAT 15089
Query 133625 GGTTTTGCCGGTCAGA 133640
||| || ||||| |||
Sbjct 15088 GGTCTTTCCGGTAAGA 15073
>seq168
Length=163348
Score = 87.8 bits (96), Expect = 2e-12
Identities = 144/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | ||| ||||| || || |||||||||||| | || | | | || || || |
Sbjct 77847 ATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCA-TCTTCAAGTT 77789
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
| || || ||| | ||||| || ||||| || || ||||| || |||||||| |||||
Sbjct 77788 GTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTGGATCT 77729
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||||| | || | || || | | || || || | ||| | |||||||||||
Sbjct 77728 TGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGGGTAATGGTTTTGCCGG 77669
Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660
| || ||||| ||||| || |||||
Sbjct 77668 TGAGGGTTTTGACGAAGATTTGCAT 77644
Score = 82.4 bits (90), Expect = 7e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||| || ||||| || ||| | || | || || ||||| |||||||| || ||||||
Sbjct 78026 TCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCCTTG 77967
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| ||||| ||||| | || | ||||| | || || || || | ||||
Sbjct 77966 TCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCAAGAGTGATA 77907
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || ||||| ||||| || ||||||||||||||
Sbjct 77906 GTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 77872
>seq92
Length=23966
Score = 86.0 bits (94), Expect = 6e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 116476 GGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAACAC 116535
||||||||||| ||||||||||| |||| || ||||||||| ||||| || ||| ||
Sbjct 13600 GGCTTCCACGTCCACGAGTTTGGAGACAACACCAACGGCTGTACCTCTGCTGGCCCCCAT 13541
Query 116536 TTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGTGAC 116595
| ||||||| || ||||||| || |||| || | ||| | ||||| ||||||
Sbjct 13540 TACAACCCCTTTAAAAAGCACCACGGTGCTCCCACCGACTCCGAGAGGCACGTTGGTGAC 13481
Query 116596 CTGGG 116600
|| ||
Sbjct 13480 CTCGG 13476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483415718038840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |