Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
45.1_202017-07-07] 841 sequences; 18,436,157 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq434 168 8e-37
seq168 127 3e-24
>seq434
Length=110320
Score = 168 bits (186), Expect = 8e-37
Identities = 711/1113 (64%), Gaps = 21/1113 (2%)
Strand=Plus/Plus
Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402
|||||| || |||| |||||||| | || || || || || | | ||||| |
Sbjct 13743 CCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGGT 13802
Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAA 118462
|| |||| || | |||| | |||||| || || ||||| || || || || ||
Sbjct 13803 ACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGAA 13862
Query 118463 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAA 118522
|| | ||| | | || | ||||| |||| || |||| | || || ||
Sbjct 13863 GATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGAA 13922
Query 118523 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCG 118582
| || || ||||| |||||||| || |||| || ||||| | ||| || || || ||
Sbjct 13923 AGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTTGCG 13982
Query 118583 AGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC 118642
|| ||| ||||| | || | ||| || ||| || || || || |||||
Sbjct 13983 GGCTTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTATCAAGGTTCTTTGTAACAAC 14042
Query 118643 CTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTT 118702
||| || || || || ||||||| | | ||| | |||| || | || |
Sbjct 14043 CTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGAAGGC 14102
Query 118703 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 118762
|||||| || | || || |||||||| |||| ||||| | || ||||| ||
Sbjct 14103 AGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTCCAT 14162
Query 118763 AATTTCCGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT 118820
||||| || || | ||| || | | | ||||| || | || |||||| || |||||
Sbjct 14163 GATTTCAGTACAGAGGTTACTGGATT--TGATGGTACCAAGGTGCTTTTGGTTGGACTTG 14220
Query 118821 GTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGA 118880
| ||| ||||||||||| || || || || ||||| ||||| | || |||
Sbjct 14221 GAGTTGGCAGCATCCTTGTAGCAGATATAAGGGACACCAGTCTCGGTTTGAGCCTCGAGG 14280
Query 118881 ATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGG-CGTTGGCTCGCCCCTCTTCCTCGT 118938
|| || ||| | | || | ||| | ||| | || || |||| | || ||||
Sbjct 14281 ATGGCGAACCAAAGCTTCTGG-GCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTC-TCGT 14338
Query 118939 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 118998
| | || || |||||| ||||| || | || | || || || ||
Sbjct 14339 AGCTCTCATAAAGCTTTTCAAATTCTTCGCCGTAAACGTCGGCAAGTCCAGGGCACTCGG 14398
Query 118999 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGA 119058
| || || | |||| ||| | ||| | || || ||||||||||| || || | ||
Sbjct 14399 CGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGA 14458
Query 119059 TCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 119118
||||||| || |||| ||||| ||| || | || || | || || || | |
Sbjct 14459 TCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTA 14518
Query 119119 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 119178
| || | ||||| | | ||| |||||||| || || || || | |||| | ||
Sbjct 14519 AGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACC-- 14576
Query 119179 TACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCA 119232
| |||| |||| | || | || || | || ||||||| | | || ||||
Sbjct 14577 -AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCA 14635
Query 119233 TTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCT 119290
| |||||||| || | ||| | ||||| || || ||| | ||| | | | || |
Sbjct 14636 TAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCT--TCGCACG 14693
Query 119291 GACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGT 119350
|| || ||| ||||| | ||||||||| || || ||| ||||| || || || | |
Sbjct 14694 GATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTT 14753
Query 119351 GAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGA 119410
|||| | ||||||| ||||| || |||||| |||| | || | ||||||||| ||
Sbjct 14754 GAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGA 14813
Query 119411 CATTTGAGGCCTGGGTGTACCAGCGTTGAAGAG 119443
|||||| || | ||| |||||||||||||| ||
Sbjct 14814 CATTTGGGGTCGGGGAGTACCAGCGTTGAAAAG 14846
>seq168
Length=163348
Score = 127 bits (140), Expect = 3e-24
Identities = 122/154 (79%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074
|||||| || ||||||||||||||| || |||||||| || || |||||| |||||
Sbjct 63433 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACC 63492
Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGA 130133
||||||||||| |||||||| | |||||| || | | | ||| || |||||||||||||
Sbjct 63493 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAA-GAACCAGAGAAGAAGA 63551
Query 130134 TCCCCTCCACACACGCGAACGCAAAGAGACGCTC 130167
| |||||||| || || |||| ||| |||||
Sbjct 63552 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTC 63585
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618428698699960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |