Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 45.1_202017-07-07] 841 sequences; 18,436,157 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq434 168 8e-37 seq168 127 3e-24 >seq434 Length=110320 Score = 168 bits (186), Expect = 8e-37 Identities = 711/1113 (64%), Gaps = 21/1113 (2%) Strand=Plus/Plus Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 |||||| || |||| |||||||| | || || || || || | | ||||| | Sbjct 13743 CCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGGT 13802 Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAA 118462 || |||| || | |||| | |||||| || || ||||| || || || || || Sbjct 13803 ACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGAA 13862 Query 118463 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAA 118522 || | ||| | | || | ||||| |||| || |||| | || || || Sbjct 13863 GATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGAA 13922 Query 118523 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCG 118582 | || || ||||| |||||||| || |||| || ||||| | ||| || || || || Sbjct 13923 AGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTTGCG 13982 Query 118583 AGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC 118642 || ||| ||||| | || | ||| || ||| || || || || ||||| Sbjct 13983 GGCTTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTATCAAGGTTCTTTGTAACAAC 14042 Query 118643 CTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTT 118702 ||| || || || || ||||||| | | ||| | |||| || | || | Sbjct 14043 CTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGAAGGC 14102 Query 118703 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 118762 |||||| || | || || |||||||| |||| ||||| | || ||||| || Sbjct 14103 AGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTCCAT 14162 Query 118763 AATTTCCGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT 118820 ||||| || || | ||| || | | | ||||| || | || |||||| || ||||| Sbjct 14163 GATTTCAGTACAGAGGTTACTGGATT--TGATGGTACCAAGGTGCTTTTGGTTGGACTTG 14220 Query 118821 GTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGA 118880 | ||| ||||||||||| || || || || ||||| ||||| | || ||| Sbjct 14221 GAGTTGGCAGCATCCTTGTAGCAGATATAAGGGACACCAGTCTCGGTTTGAGCCTCGAGG 14280 Query 118881 ATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGG-CGTTGGCTCGCCCCTCTTCCTCGT 118938 || || ||| | | || | ||| | ||| | || || |||| | || |||| Sbjct 14281 ATGGCGAACCAAAGCTTCTGG-GCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTC-TCGT 14338 Query 118939 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 118998 | | || || |||||| ||||| || | || | || || || || Sbjct 14339 AGCTCTCATAAAGCTTTTCAAATTCTTCGCCGTAAACGTCGGCAAGTCCAGGGCACTCGG 14398 Query 118999 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGA 119058 | || || | |||| ||| | ||| | || || ||||||||||| || || | || Sbjct 14399 CGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGA 14458 Query 119059 TCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 119118 ||||||| || |||| ||||| ||| || | || || | || || || | | Sbjct 14459 TCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTA 14518 Query 119119 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 119178 | || | ||||| | | ||| |||||||| || || || || | |||| | || Sbjct 14519 AGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACC-- 14576 Query 119179 TACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCA 119232 | |||| |||| | || | || || | || ||||||| | | || |||| Sbjct 14577 -AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCA 14635 Query 119233 TTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCT 119290 | |||||||| || | ||| | ||||| || || ||| | ||| | | | || | Sbjct 14636 TAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCT--TCGCACG 14693 Query 119291 GACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGT 119350 || || ||| ||||| | ||||||||| || || ||| ||||| || || || | | Sbjct 14694 GATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTT 14753 Query 119351 GAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGA 119410 |||| | ||||||| ||||| || |||||| |||| | || | ||||||||| || Sbjct 14754 GAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGA 14813 Query 119411 CATTTGAGGCCTGGGTGTACCAGCGTTGAAGAG 119443 |||||| || | ||| |||||||||||||| || Sbjct 14814 CATTTGGGGTCGGGGAGTACCAGCGTTGAAAAG 14846 >seq168 Length=163348 Score = 127 bits (140), Expect = 3e-24 Identities = 122/154 (79%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||||||||||||||| || |||||||| || || |||||| ||||| Sbjct 63433 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACC 63492 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGA 130133 ||||||||||| |||||||| | |||||| || | | | ||| || ||||||||||||| Sbjct 63493 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAA-GAACCAGAGAAGAAGA 63551 Query 130134 TCCCCTCCACACACGCGAACGCAAAGAGACGCTC 130167 | |||||||| || || |||| ||| ||||| Sbjct 63552 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTC 63585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618428698699960