Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
45.1_202017-07-07] 841 sequences; 18,436,157 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq434 163 3e-35
seq140 149 7e-31
>seq434
Length=110320
Score = 163 bits (180), Expect = 3e-35
Identities = 448/679 (66%), Gaps = 8/679 (1%)
Strand=Plus/Minus
Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353
|| |||||||||||||| | || || ||||| |||||||| ||||| ||||||
Sbjct 14846 CTTTTCAACGCTGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 14787
Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413
|||||||| || || || |||||||| || |||||| ||||| || |||||||||
Sbjct 14786 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 14727
Query 53414 TCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGG 53472
| |||||||| ||| | ||| | | | || |||||||||| ||| | || ||
Sbjct 14726 GCCGGTGGTATTGGTCTTCACATTCAC-AATATCCGTGCGAAGGGCTCCTACATTGCCGG 14668
Query 53473 GACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCG 53532
|| || || | || | || ||| | ||||||||||| | | | || ||| || ||
Sbjct 14667 TACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCG 14608
Query 53533 GTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTG 53592
||||| | || |||||| ||||| || | ||||||||||| || ||||| ||
Sbjct 14607 ATACGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTG 14548
Query 53593 GCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCG 53652
|||||| || | | || || | || | | ||| || ||| | || ||| | ||
Sbjct 14547 GCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTACG 14488
Query 53653 CTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGA 53711
||||| || || ||| || || ||||| | || || |||||| || ||| ||
Sbjct 14487 AGCTCGTGATCTTTTCTAC-GCCCTCTGGATCTCCGATCTTTTCATG--AAGCGTGTCGA 14431
Query 53712 A--GGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTA 53769
| || | ||| ||| || ||||| || ||||||||| || || | || ||
Sbjct 14430 ATCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTA 14371
Query 53770 CGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAA 53829
||| || || ||| | || | ||| || |||| |||||| | ||| |
Sbjct 14370 CGGCGAAGAATTTGAAAAGCTTTATGAGAGCTACGAGAGGCAGGGCAAGGGAAGGAAAAC 14311
Query 53830 GGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCC 53889
|||| || | || | ||| || |||||| || || ||||| || ||
Sbjct 14310 TATCAAAGCCCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTCCC 14251
Query 53890 GTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCAT 53949
|| || |||||||||||| | | |||| ||| |||||| ||| || | || |||
Sbjct 14250 TTATATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCAT 14191
Query 53950 CAAATCGAGCAACTTATGT 53968
|||||| || ||| | |||
Sbjct 14190 CAAATCCAGTAACCTCTGT 14172
>seq140
Length=11006
Score = 149 bits (164), Expect = 7e-31
Identities = 288/425 (68%), Gaps = 0/425 (0%)
Strand=Plus/Plus
Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211
||||| |||||||| ||||||||||| |||| | ||| || ||| || | | | |
Sbjct 3738 CCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATAA 3797
Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271
|| || || | ||| ||| || || | ||| ||||||| | | | || ||
Sbjct 3798 TCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGGG 3857
Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331
| ||| || | ||| | ||| ||| ||||| || ||||||| || ||
Sbjct 3858 TGGAAGATTGCCCGAGTCATCCGTGGAAGGTTTGTGAAGATATAACGAGCAGAAGCTGCG 3917
Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391
|| || ||||| |||||||| ||||| ||||| || | || |||| || || | ||||
Sbjct 3918 TCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGTTG 3977
Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCA 117451
|| ||| || |||||||| || || |||||| || | || || ||||||
Sbjct 3978 TTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTGGAAGTCAAACTGGCTTCACCA 4037
Query 117452 TGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGAC 117511
|||||||| || || | ||||| |||||||| || |||||||| ||||| || |||
Sbjct 4038 TGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGATTTCTTTG 4097
Query 117512 GTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571
|| ||||| ||||| || || | | ||||| ||||||| || || ||||| ||
Sbjct 4098 GTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACCGTCG 4157
Query 117572 GCCAC 117576
|||||
Sbjct 4158 GCCAC 4162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547210247391800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |