Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 45.1_202017-07-07] 841 sequences; 18,436,157 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq312 134 1e-26 >seq312 Length=129912 Score = 134 bits (148), Expect = 1e-26 Identities = 240/346 (69%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 30116 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 30175 || |||||||| || | | ||| || |||||||| ||| |||||| ||||| ||| Sbjct 106505 TTTGGGTTCCAAGCCGATAAGATAATCCGCCTGTCAGTTGGATTGTTCTTGATGGTGTCG 106446 Query 30176 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATG-TCCGTGTA 30234 | | ||||||| || || || || | || |||||| || || || ||||| Sbjct 106445 ATTACCCTTTGCAGTTGGTCGACTCCTTTGTCCTTATAGTCT-CCGTCGGCATCAGTGTA 106387 Query 30235 CTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30294 ||| || || ||||| |||||||||||||||||||| ||||||| || || || || Sbjct 106386 CTCGGCACCAAAATGTCTCCACTGGAACCCGTACACAGGTCCCAAATCACCTTCCCTTCT 106327 Query 30295 GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 30354 ||| ||| || ||| |||| || ||| || ||||| ||||||||||| ||| Sbjct 106326 GTGGCCGAGCCCGACCTTCTCCAGGAATTCTTTGCTTCCGTTACCGTCCCAGATCCCTAC 106267 Query 30355 CCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30414 |||| ||||||| | |||| || || | || |||||||||| ||||| | Sbjct 106266 GCCCTGACTAGAGAGCACCTTGGCGTCGGTACAACCAGAAACGAACCACAAAAGCTCGGC 106207 Query 30415 CACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 30458 | |||| | | || ||||| | |||||||| ||||| |||| Sbjct 106206 AATGACG--CCGCGAAGGAAGACGCGTTTGGTCGTCAGGAGAGGAA 106163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406306235445372