Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 45.1_202017-07-07] 841 sequences; 18,436,157 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq168 156 1e-32 seq823 100 7e-16 >seq168 Length=163348 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | || ||| || ||||| || || || ||||||| ||||||||||| | |||| Sbjct 77864 CGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTT 77805 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| || || || || |||||||| |||||||| || || || || ||||| Sbjct 77804 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 77745 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| ||| |||||||| || ||| |||| || || | Sbjct 77744 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGG 77685 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || ||||| || | ||||| | ||| | |||||| Sbjct 77684 GTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77644 Score = 136 bits (150), Expect = 9e-27 Identities = 137/178 (77%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 225536 TGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTT 225595 |||| |||| | ||| || |||||||| |||||||| ||||| ||||| | |||||| | Sbjct 77542 TGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCT 77483 Query 225596 GGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTG 225655 |||| || || ||||| ||||||||||||||||| ||| ||| ||||||||||| | Sbjct 77482 GGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGG 77423 Query 225656 AGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | | ||||| || | ||||| ||||| || || | ||| || | ||| | |||||| Sbjct 77422 AAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77365 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | || ||| || ||||| || || || ||||||| ||||||||||| | |||| Sbjct 78652 CGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTT 78593 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| || || || || |||||||| |||||||| || || || || ||||| Sbjct 78592 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 78533 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| || |||||||| || | ||| || || | Sbjct 78532 TCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGATTCGACTTCAAGA 78473 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| ||||| ||||| Sbjct 78472 GTGATTGTCTTACCCGT 78456 Score = 132 bits (146), Expect = 1e-25 Identities = 138/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 225533 CATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTT 225592 || ||||||| | |||||||| ||||| || || ||||| || |||||||| | ||||| Sbjct 78052 CACTGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTT 77993 Query 225593 GTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652 ||||||| || || ||||| |||||||| || ||||| ||| ||| |||||||||| Sbjct 77992 GTTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGT 77933 Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712 | |||| ||| || || | ||||| ||||| || || | ||| || | ||| | |||| Sbjct 77932 CAGAGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCA 77873 Query 225713 T 225713 | Sbjct 77872 T 77872 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| || || || || ||||||| ||||| |||| | ||| | ||||| Sbjct 78362 AGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 78303 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||| || || | |||||| || || || ||||||||||||||||| Sbjct 78302 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 78243 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || ||||| ||||| || | || || || | ||||| ||| Sbjct 78242 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTC 78183 Query 225682 TTGCCCGTCAAAGTTTT 225698 || || |||||||| || Sbjct 78182 TTTCCGGTCAAAGTCTT 78166 >seq823 Length=80675 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225550 GTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATA 225609 || || || || || |||||||| || |||||||| | ||| || ||||| || || ||| Sbjct 15216 GTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATA 15157 Query 225610 CCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669 || |||||||| |||||||| ||| ||| ||||||||||| |||| || || || Sbjct 15156 CCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCG 15097 Query 225670 AACGTGATCGTCTTGCCCGT 225689 | ||||| ||||| || || Sbjct 15096 AGGGTGATGGTCTTTCCGGT 15077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192518350103654