Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 55.1_202017-07-07] 669 sequences; 18,368,897 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq334 91.5 2e-13 >seq334 Length=290900 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | |||||| || | ||| | || ||||||||| ||||||||||| | Sbjct 78798 CCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAA 78739 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || || || || || ||||| |||||||| ||||| || | || Sbjct 78738 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 78679 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | | ||||||||| ||| || |||| ||| | | | || ||||||||||| || Sbjct 78678 ATACCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTATCGCTCGATTCGAC 78620 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAG 43162 || | ||||| || || ||||| || Sbjct 78619 TTCAAGAGTGATTGTCTTACCCGTAAG 78593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571812818175320