Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 55.1_202017-07-07] 669 sequences; 18,368,897 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq334 123 6e-23 seq38 104 5e-17 >seq334 Length=290900 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||||| || || || ||||| || || || ||||||| || ||||| Sbjct 78780 ACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATCTTCA 78721 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||||||||| || || || || | || |||||||| || || || || || || || Sbjct 78720 AGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTGG 78661 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || || || || | ||||||||| | ||| || || || || || |||||| Sbjct 78660 ATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGATTCGACTTCAAGAGTGATTGTCTTA 78601 Query 104531 CCAGTAAG 104538 || ||||| Sbjct 78600 CCCGTAAG 78593 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || || || || ||||| || ||||| | ||| || || |||||||| ||| Sbjct 78487 GTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCA 78428 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | | || ||||||||||| || ||||| || ||||||||||| || || Sbjct 78427 GCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTA 78368 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || | || || || || || |||||||| || || | || Sbjct 78367 ACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTTTCCGGTCAAAGTC 78308 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 78307 TTGACAAAGATCTGCAT 78291 Score = 118 bits (130), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||||| || || || ||||| || || || ||||||| || ||||| Sbjct 77992 ACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATCTTCA 77933 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||||||||| || || || || | || |||||||| || || || || || || || Sbjct 77932 AGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTGG 77873 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || || ||||| || | |||||| ||| ||| || || || ||||| || Sbjct 77872 ATCTTGGCCTTGACATTGTCGATGGTATCAGAGCT---TTCGACTTCAAGGGTAATGGTT 77816 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| || || || ||||| Sbjct 77815 TTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77784 Score = 114 bits (126), Expect = 3e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 || ||||| | ||||| ||| || || ||||| ||||| || || || | | ||||| Sbjct 78187 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 78128 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 |||||||| || || || || ||||||||||| || || ||||| || | ||| || Sbjct 78127 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAG 78068 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||| ||||| || || |||||||| || ||||| || || || || |||||||| Sbjct 78067 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 78012 Score = 102 bits (112), Expect = 2e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 ||||| || ||||| || || ||||| || || || |||||||| || | | || || Sbjct 77680 TAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGG 77621 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 |||||||| || || || || || || ||||| || || ||||| || | ||| ||| | Sbjct 77620 TCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 77561 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || || || || || ||||||||||| || || || || || || || ||||| Sbjct 77560 GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77505 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198 |||||||||| || || || ||||| ||||| || || ||||| || | ||||| ||| Sbjct 63718 TTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCCATCTTCTGGC 63659 Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACG 269258 | ||||| |||| || ||||| || | || ||||||||||| | || | |||| Sbjct 63658 TTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACGAGCTCATCTCTCGAGACG 63599 Query 269259 AAGGTTTACACTGCGACTTCGCTTGT 269284 | ||| | ||| |||||| || ||| Sbjct 63598 AGGGTCTCCACACCGACTTTGCCTGT 63573 >seq38 Length=49137 Score = 104 bits (114), Expect = 5e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || |||||||| || ||||| || |||||||| ||||||||||| || ||||| ||| Sbjct 12476 GTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGG 12535 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 || ||||| ||||| | ||||| ||| | || || || ||||| ||||| |||||||| Sbjct 12536 TTAAAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCAAACGAGTTGATCAGCAGGGAT 12595 Query 269258 GAAGG 269262 || || Sbjct 12596 GAGGG 12600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151388530716652