Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 55.1_202017-07-07] 669 sequences; 18,368,897 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq334 149 8e-31 seq490 104 3e-17 >seq334 Length=290900 Score = 149 bits (164), Expect = 8e-31 Identities = 185/253 (73%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| || || ||| ||| ||||||||||||| | || || ||||| || || || || Sbjct 63573 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAG 63632 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| || || ||||| |||||||| || ||||| ||||| || ||||| ||||| Sbjct 63633 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 63692 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 33479 ||| || || || |||||||| ||||| |||| ||| || ||| | | |||| Sbjct 63693 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 63752 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| ||||||| |||||||||||| | |||||| || || || || || | Sbjct 63753 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 63812 Query 33540 AAAGAGATAGTTT 33552 |||||| ||||| Sbjct 63813 AAAGAGGAAGTTT 63825 >seq490 Length=110099 Score = 104 bits (114), Expect = 3e-17 Identities = 293/442 (66%), Gaps = 6/442 (1%) Strand=Plus/Plus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 ||| || || || || |||| | | | | |||||| || || | |||||||| | | Sbjct 14433 TTCAAATTCTTCGCCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 14492 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63255 ||| || || || | || || ||||| || ||||| | ||||| || || || || Sbjct 14493 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 14552 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 63314 | ||||| | | || ||||| || || ||||| ||||| || | ||| | Sbjct 14553 A-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAGTCA 14610 Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374 | | ||||| ||||| || || | || ||||| | | ||||| || ||||| || Sbjct 14611 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 14670 Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434 || ||||| | ||||| ||| ||| | ||| ||| | ||| ||||| || ||||| Sbjct 14671 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 14730 Query 63435 GATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT-TGATAG 63493 || |||||||||||||| || ||| || | ||||| ||||| ||| ||| || Sbjct 14731 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGA-AG 14789 Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 ||| || || || || | || ||||| || || || | || || |||||||| Sbjct 14790 ACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACC 14849 Query 63554 CTCTATGCTATCATCGATCATG 63575 || ||| ||||| ||||| Sbjct 14850 ATCAATGGAGTCATCCTTCATG 14871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622941990604040