Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
55.1_202017-07-07] 669 sequences; 18,368,897 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq334 149 8e-31
seq490 104 3e-17
>seq334
Length=290900
Score = 149 bits (164), Expect = 8e-31
Identities = 185/253 (73%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362
||| || || ||| ||| ||||||||||||| | || || ||||| || || || ||
Sbjct 63573 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAG 63632
Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422
|| ||||| || || ||||| |||||||| || ||||| ||||| || ||||| |||||
Sbjct 63633 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 63692
Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 33479
||| || || || |||||||| ||||| |||| ||| || ||| | | ||||
Sbjct 63693 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 63752
Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539
||||| ||||||| |||||||||||| | |||||| || || || || || |
Sbjct 63753 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 63812
Query 33540 AAAGAGATAGTTT 33552
|||||| |||||
Sbjct 63813 AAAGAGGAAGTTT 63825
>seq490
Length=110099
Score = 104 bits (114), Expect = 3e-17
Identities = 293/442 (66%), Gaps = 6/442 (1%)
Strand=Plus/Plus
Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196
||| || || || || |||| | | | | |||||| || || | |||||||| | |
Sbjct 14433 TTCAAATTCTTCGCCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 14492
Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63255
||| || || || | || || ||||| || ||||| | ||||| || || || ||
Sbjct 14493 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 14552
Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 63314
| ||||| | | || ||||| || || ||||| ||||| || | ||| |
Sbjct 14553 A-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAGTCA 14610
Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374
| | ||||| ||||| || || | || ||||| | | ||||| || ||||| ||
Sbjct 14611 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 14670
Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434
|| ||||| | ||||| ||| ||| | ||| ||| | ||| ||||| || |||||
Sbjct 14671 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 14730
Query 63435 GATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT-TGATAG 63493
|| |||||||||||||| || ||| || | ||||| ||||| ||| ||| ||
Sbjct 14731 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGA-AG 14789
Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553
||| || || || || | || ||||| || || || | || || ||||||||
Sbjct 14790 ACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACC 14849
Query 63554 CTCTATGCTATCATCGATCATG 63575
|| ||| ||||| |||||
Sbjct 14850 ATCAATGGAGTCATCCTTCATG 14871
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622941990604040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |