Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 55.1_202017-07-07] 669 sequences; 18,368,897 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq490 230 6e-55 seq38 89.7 1e-12 >seq490 Length=110099 Score = 230 bits (254), Expect = 6e-55 Identities = 650/996 (65%), Gaps = 12/996 (1%) Strand=Plus/Minus Query 363573 CAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGA 363632 ||| ||||| |||| || || ||||| || ||||| || | |||||||| || Sbjct 14919 CAACGCTGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAGGATGA 14860 Query 363633 TTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGG 363692 ||||| || ||||||| || || || |||| ||||||| || ||||||| ||| || Sbjct 14859 CTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACTGCCGG 14800 Query 363693 CGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGG 363752 || |||||| | || |||||| | ||||| || | |||||| ||| || Sbjct 14799 TGGTATTGGTCTTCACATTCACAATATCCGTGCGAAGGGCTCCTACATTGCCGGTACCAA 14740 Query 363753 GGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGT 363812 || ||||| || || | |||| ||||| || | | ||| || || | ||||| Sbjct 14739 TGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGATACGT 14680 Query 363813 CGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGC 363872 || || ||||| ||||| || || || || || ||||| |||||| || || Sbjct 14679 TGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTGGCACGC 14620 Query 363873 CGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACG 363932 ||| | ||||| || |||| | |||| ||| || || ||||| | || || || Sbjct 14619 TGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTACGAGCTCG 14560 Query 363933 TGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAA 363992 |||||| ||||| || || ||| | || || | ||| |||||||| || || | | | Sbjct 14559 TGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGG 14500 Query 363993 GAATTGGTCACTCTTTTG---CCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGA 364049 | ||||| |||||| || ||| | ||| || || || ||| |||| || | || || Sbjct 14499 GGATTGG--ACTCTTATGTGTCCCGC-CGAGTGCCCTGGACTTGCCGACGTTTACGGCGA 14443 Query 364050 CGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCC 364109 || | || || || || | || || | |||| |||| | || || || Sbjct 14442 AGAATTTGAAAAGCTTTATGAGAGCTACGAGAGGCAGGGCAAGGGAAGGAAAACTATCAA 14383 Query 364110 CGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATAT 364169 || |||||||| ||||| |||||| | || | || | ||||| || || ||||| Sbjct 14382 AGCCCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTCCCTTATAT 14323 Query 364170 GTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCA 364229 | ||||| ||| | |||| |||||||||||| ||||||||||||| || | Sbjct 14322 CTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCATCAAATC 14263 Query 364230 GAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289 || ||||| ||||| || || || || || | |||| || || ||| || ||||| Sbjct 14262 CAGTAACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTGCTGTCTGTAA 14203 Query 364290 CCTTGCGTCGATCGCGCTTCCGGCGTTTGTA------AAAGATGGTACTTTTGACCACCA 364343 ||||| || | || ||||| || || ||| || | | | |||| | | Sbjct 14202 TCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGACCTTGAACGTCGCGTCTATGACTTCAA 14143 Query 364344 GCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAA 364403 | || | || | ||| | || ||| || || || | || ||| | || Sbjct 14142 AAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGATACTGTAATCACCCGTAA 14083 Query 364404 TTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGG 364463 || |||||| | ||||| ||| || || ||||| ||||| || |||||||||| Sbjct 14082 CTACTATCCAGTGCCTGAGGCCCGCAACTCCAACATGCGCCATCGACCTGTTGGTCTTGG 14023 Query 364464 TGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGC 364523 ||| ||||| || || |||| ||| ||| || ||| | || || || |||| || Sbjct 14022 TGTCCAGGGTCTTGCCGACGCTTTCATGGCCCTTCGCATGCCGTTCGACTCCGCTGAGGC 13963 Query 364524 TCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTA 364559 | | | || |||| ||||||| || || || || Sbjct 13962 TAGGGAACTCAATATCCAGATCTTCGAGACGATATA 13927 >seq38 Length=49137 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 22513 GTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCA 22572 || |||||||||||||||||||| | ||| ||||||||| ||| |||| || | | Sbjct 12491 GTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGGTTAAAGAAGAGAGGG 12550 Query 22573 ATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATAC 22631 | ||||| || || || |||||||| ||||| || ||| | |||||||| | ||||| Sbjct 12551 TTGATGCCTGGACTGACATTTTCAAACGAGTTGATCAGCAGGGATGAGGGGATGCATAC 12609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303342428223158