Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
55.1_202017-07-07] 669 sequences; 18,368,897 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq334 131 1e-25
>seq334
Length=290900
Score = 131 bits (144), Expect = 1e-25
Identities = 153/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||||||||||| || | ||||| | ||||| |||||||||
Sbjct 78291 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTTGAAGTCGAGTCGTCT 78350
Query 25059 GACACTATCGA-GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||||||||| | | | || || | ||| ||||| ||||| ||||| ||||| ||
Sbjct 78351 GACACTATCGACAACGTTAAGGCGAAGATTCA-GGACAAGGAAGGTATTCCTCCTGATCA 78409
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| || | |||||||| || |||||| | || |||| ||| ||| | ||| |||||
Sbjct 78410 GCAACGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAA 78469
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
|| ||||| || || || || ||
Sbjct 78470 CATCCAAAAGGAGTCTACCCTTCA 78493
Score = 91.5 bits (100), Expect = 1e-13
Identities = 145/206 (70%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || || | ||||| ||| |||| || | ||||| || |||
Sbjct 77784 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCT 77843
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || ||||| || || ||| || ||| ||||| || || || || ||||| |
Sbjct 77844 GATACCATCGA--CAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATC 77901
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || || | || || ||||| |||||| | ||||||| || ||| | ||||||||
Sbjct 77902 AGCAACGACTCATCTTCGCCGGAAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACA 77961
Query 25177 ATATTCAAAAAGAATCCACGCTACAT 25202
|||| ||||| || || || || |||
Sbjct 77962 ATATCCAAAAGGAGTCTACCCTCCAT 77987
Score = 89.7 bits (98), Expect = 4e-13
Identities = 118/162 (73%), Gaps = 4/162 (2%)
Strand=Plus/Plus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|| |||||||| || || |||||| | |||||||| | ||||| | |||||||||||
Sbjct 77502 ACCATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCT 77561
Query 25056 TCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
|| ||||| ||||| || || ||| || ||| ||||| || || || || ||||
Sbjct 77562 TCCGACACCATCGA--CAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTG 77619
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155
|||| || || | || ||||| || || || | |||||||
Sbjct 77620 ACCAGCAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATG 77661
Score = 84.2 bits (92), Expect = 2e-11
Identities = 129/181 (71%), Gaps = 6/181 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||| | ||||| || | ||||| | || || || || |||
Sbjct 78012 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCCTCT 78071
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| ||||| || || | || || | ||| ||||| || || || || ||||||
Sbjct 78072 GACACCATCGA--CAATGTCAAGGCGAAGATTCAG-GACAAGGAGGGTATCCCTCCTGAC 78128
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
||||| || | || || ||||| || ||| | || |||| ||| ||| || ||||||
Sbjct 78129 CAACAACGATTGATCTTCGCCGGAAAGCAACTGGAGGATGGTCGAACTTTGTCTGATTAC 78188
Query 25176 A 25176
|
Sbjct 78189 A 78189
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433324466887235
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |