Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
55.1_202017-07-07] 669 sequences; 18,368,897 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq490 179 7e-40
seq334 132 9e-26
seq38 89.7 1e-12
>seq490
Length=110099
Score = 179 bits (198), Expect = 7e-40
Identities = 440/664 (66%), Gaps = 10/664 (2%)
Strand=Plus/Plus
Query 244733 ATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCG 244792
|| || || |||||||||||| | |||||||| || ||||||| || |||||||||| |
Sbjct 14242 ATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAG 14301
Query 244793 TTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACG 244852
||| || ||||||||| || | || | || |||||| || || |||||| |
Sbjct 14302 TTGGCAGCATCCTTGTAGCAGATATAAGGGACACCAGTCTCGGTTTGAGCCTCGAGGATG 14361
Query 244853 CTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGG 244912
| ||| || | | || |||| || | | ||||||||| ||||||||
Sbjct 14362 GCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTCGTAGCTC 14421
Query 244913 GTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG 244972
|| || || || || ||| | || ||| | || || |||||| || ||
Sbjct 14422 TCATAAAGCTTTTCAAATTCTTCGCCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGA 14481
Query 244973 CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAG 245032
||||| ||| |||| || || || | ||| | || |||||| || |||| |||||||
Sbjct 14482 CACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAG 14541
Query 245033 AGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCC 245092
||||| | ||| || || | | | ||| ||| ||| ||||||||| | ||
Sbjct 14542 AGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCA 14601
Query 245093 AAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGC 245152
| |||||||| || || ||||||| ||||| | |||| |||| ||| || || |||
Sbjct 14602 ATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGC 14661
Query 245153 TTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTG-AAGATGCGCAGGGTAG 245207
||||| || || || | || | | |||||| |||| | ||| | || || |||
Sbjct 14662 TTGTTACCACCTTG----ATCAACGTATCGAGCTGTGGCGTCGTAAGCT-CGGAGCATAG 14716
Query 245208 GCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGT 245267
| | |||||||| |||| || ||||| || ||||||| |||||| | | || |
Sbjct 14717 GAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATAT 14776
Query 245268 TGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGG 245327
|| ||| | || | || ||||| ||||||||| | || ||| |||||| |
Sbjct 14777 TGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAG 14836
Query 245328 TGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCT 245387
| || || || || ||| ||| ||||||| | || ||||| || |||| |
Sbjct 14837 TATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTT 14896
Query 245388 GGGG 245391
||||
Sbjct 14897 GGGG 14900
>seq334
Length=290900
Score = 132 bits (146), Expect = 9e-26
Identities = 134/172 (78%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752
||||||||| | || | || ||| | ||||| ||||| ||||||||||| || | |||
Sbjct 63734 TTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTC 63675
Query 42753 GCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811
|| |||||||||||||| ||| || |||| || ||||| || || |||||||| |||||
Sbjct 63674 GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTC-ATGCCTGGTCTTACCTTCTCTAACGA 63616
Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863
|||||| | |||||||| || || | ||||||||||| ||||| |||
Sbjct 63615 GCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCCTGTCTCCTCTTC 63564
>seq38
Length=49137
Score = 89.7 bits (98), Expect = 1e-12
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761
|| ||||| || ||| | ||| || ||||| ||||| || || | || || | |||
Sbjct 12470 AGACTGGTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATC 12529
Query 42762 TTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821
|||||| | ||| ||| | || |||||| ||||| || || || ||||| | ||||||
Sbjct 12530 TTCTGGTTAAAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCAAACGAGTTGATCAGC 12589
Query 42822 AGGGACGAGGGGCTGCATA 42840
||||| |||||| ||||||
Sbjct 12590 AGGGATGAGGGGATGCATA 12608
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944331302963440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |