Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 55.1_202017-07-07] 669 sequences; 18,368,897 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq490 179 7e-40 seq334 132 9e-26 seq38 89.7 1e-12 >seq490 Length=110099 Score = 179 bits (198), Expect = 7e-40 Identities = 440/664 (66%), Gaps = 10/664 (2%) Strand=Plus/Plus Query 244733 ATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCG 244792 || || || |||||||||||| | |||||||| || ||||||| || |||||||||| | Sbjct 14242 ATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAG 14301 Query 244793 TTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACG 244852 ||| || ||||||||| || | || | || |||||| || || |||||| | Sbjct 14302 TTGGCAGCATCCTTGTAGCAGATATAAGGGACACCAGTCTCGGTTTGAGCCTCGAGGATG 14361 Query 244853 CTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGG 244912 | ||| || | | || |||| || | | ||||||||| |||||||| Sbjct 14362 GCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTCGTAGCTC 14421 Query 244913 GTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG 244972 || || || || || ||| | || ||| | || || |||||| || || Sbjct 14422 TCATAAAGCTTTTCAAATTCTTCGCCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGA 14481 Query 244973 CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAG 245032 ||||| ||| |||| || || || | ||| | || |||||| || |||| ||||||| Sbjct 14482 CACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAG 14541 Query 245033 AGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCC 245092 ||||| | ||| || || | | | ||| ||| ||| ||||||||| | || Sbjct 14542 AGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCA 14601 Query 245093 AAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGC 245152 | |||||||| || || ||||||| ||||| | |||| |||| ||| || || ||| Sbjct 14602 ATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGC 14661 Query 245153 TTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTG-AAGATGCGCAGGGTAG 245207 ||||| || || || | || | | |||||| |||| | ||| | || || ||| Sbjct 14662 TTGTTACCACCTTG----ATCAACGTATCGAGCTGTGGCGTCGTAAGCT-CGGAGCATAG 14716 Query 245208 GCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGT 245267 | | |||||||| |||| || ||||| || ||||||| |||||| | | || | Sbjct 14717 GAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATAT 14776 Query 245268 TGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGG 245327 || ||| | || | || ||||| ||||||||| | || ||| |||||| | Sbjct 14777 TGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAG 14836 Query 245328 TGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCT 245387 | || || || || ||| ||| ||||||| | || ||||| || |||| | Sbjct 14837 TATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTT 14896 Query 245388 GGGG 245391 |||| Sbjct 14897 GGGG 14900 >seq334 Length=290900 Score = 132 bits (146), Expect = 9e-26 Identities = 134/172 (78%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 ||||||||| | || | || ||| | ||||| ||||| ||||||||||| || | ||| Sbjct 63734 TTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTC 63675 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 || |||||||||||||| ||| || |||| || ||||| || || |||||||| ||||| Sbjct 63674 GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTC-ATGCCTGGTCTTACCTTCTCTAACGA 63616 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 |||||| | |||||||| || || | ||||||||||| ||||| ||| Sbjct 63615 GCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCCTGTCTCCTCTTC 63564 >seq38 Length=49137 Score = 89.7 bits (98), Expect = 1e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 || ||||| || ||| | ||| || ||||| ||||| || || | || || | ||| Sbjct 12470 AGACTGGTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATC 12529 Query 42762 TTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821 |||||| | ||| ||| | || |||||| ||||| || || || ||||| | |||||| Sbjct 12530 TTCTGGTTAAAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCAAACGAGTTGATCAGC 12589 Query 42822 AGGGACGAGGGGCTGCATA 42840 ||||| |||||| |||||| Sbjct 12590 AGGGATGAGGGGATGCATA 12608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944331302963440