Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
55.1_202017-07-07] 669 sequences; 18,368,897 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq490 183 4e-41
seq334 100 3e-16
seq140 95.1 1e-14
>seq490
Length=110099
Score = 183 bits (202), Expect = 4e-41
Identities = 680/1053 (65%), Gaps = 37/1053 (4%)
Strand=Plus/Plus
Query 109988 CCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAG 110047
||||||| | ||| |||| ||||| || ||||| || || || ||||| || || ||
Sbjct 13889 CCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGAAGATCTGGA 13948
Query 110048 CATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCG 110107
||| | | || ||| | ||||||| || | | | || || | || |
Sbjct 13949 TATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGAAAGCGTCGG 14008
Query 110108 CTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTT 110167
| |||||||| ||||| ||||||| || ||||| |||||| ||| || ||
Sbjct 14009 CAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTTGCGGGCCTCAG 14068
Query 110168 CTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGA 110227
|| || || |||| ||| ||| || || || ||||| || ||| ||| || |
Sbjct 14069 GCACTGGATAGTAGTTACGGGTGATTACAGTATCAAGGTTCTTTGTAACAACCTTGGTAA 14128
Query 110228 TTTCATGGAG---TTTGTCGTAATCGA----ACGTTTTCG-TCTCCTTATTGACATATTT 110279
| || || || |||| || || || ||||| | ||| | | | ||
Sbjct 14129 TCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGAA--GGCA----- 14181
Query 110280 GGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAA 110339
|| ||||||| ||| |||||||| || |||| | || || | || ||||
Sbjct 14182 -GGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTCCAT 14240
Query 110340 AATTTCCGTACACAAGTTGGAACTC---TTAATGACACCCAAGTTCTTCTGATTCGATTT 110396
||||| ||||| | ||| ||| || ||| ||| | || ||| || || || ||
Sbjct 14241 GATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTT 14297
Query 110397 GGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAG 110456
||||||| |||||||| ||| || || ||| |||||| || || || | || |||
Sbjct 14298 GGAGTTGGCAGCATCCTTGTAGCAGATATAAGGGACACCAGTCTCGGTTTGAGCCTCGAG 14357
Query 110457 AATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTG-CGTTAGCGAGACCTTCCTCCTCG 110514
||||| ||| | | || | ||| || |||| | || | | ||| |||| |||
Sbjct 14358 GATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTC-TCG 14415
Query 110515 TACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTG 110574
|| | || | | |||||||| | ||||| || || | ||| || || |
Sbjct 14416 TAGCTCTCATAAAGCTTTTCAAATTCTTCGCCGTAAACGTCGGCAAGTCCAGGGCACTCG 14475
Query 110575 TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGA 110634
||||||| | || | ||||| ||| | || || | ||||||||| || || |
Sbjct 14476 GCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAG 14535
Query 110635 ATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGT 110694
||||| | || ||||||| ||||| || |||| || | ||| ||||| | |
Sbjct 14536 ATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTT 14595
Query 110695 AGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCC 110754
| || | ||||| | | ||| | |||||| || || ||||||| |||| || ||
Sbjct 14596 AAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACC- 14654
Query 110755 TTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGC 110808
| |||| ||| | || | ||| || || |||||||| | | | | | ||||
Sbjct 14655 --AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGC 14712
Query 110809 ATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGA 110868
|||||||| || || | ||| | |||||| ||||| ||| ||| || |||||
Sbjct 14713 ATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGG 14772
Query 110869 ATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGT 110927
|| | ||| || || | |||||||||||| || ||| || || ||||| ||| |
Sbjct 14773 ATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCT-T 14831
Query 110928 GAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGA 110987
||| ||| | || ||||||||||| || || |||| |||| | || ||||| || ||
Sbjct 14832 GAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGA 14891
Query 110988 CATCTGAGGACGAGGCGTTCCCGCATTGAAGAG 111020
||| || || || || || || || ||||| ||
Sbjct 14892 CATTTGGGGTCGGGGAGTACCAGCGTTGAAAAG 14924
>seq334
Length=290900
Score = 100 bits (110), Expect = 3e-16
Identities = 210/308 (68%), Gaps = 19/308 (6%)
Strand=Plus/Plus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || || || || || || |||||||||||||| ||| |||| ||| ||
Sbjct 63576 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACC 63635
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614
||||||||| |||| ||||| ||||| ||||||| ||| ||||| ||||||||
Sbjct 63636 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAAGAT 63695
Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTT---GTC--- 119668
|||||||| || ||||| | || ||||| | ||| | ||| || |||
Sbjct 63696 ACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAA---CAAGATTTTTGGTCAGA 63752
Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTC-TATGCAGGGGACAGTTTGGATGGCTT 119727
|| ||| |||||||||| |||||| | || || || || | || | || || |
Sbjct 63753 GATCCATCGAAGAGCCCAGTCGGCCTT-CTTTCGGATACAAGGAATGGTGTCCATAGCGT 63811
Query 119728 CGAA----AAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAG 119783
| || ||||| | || |||| |||||||| || | || ||||| ||||
Sbjct 63812 CAAAGAGGAAGTTTCGTC----GAGCAGTGTCCTTAATGTAGGTGTCGATGAGGAGAGAG 63867
Query 119784 TAGGTCTC 119791
||||||||
Sbjct 63868 TAGGTCTC 63875
>seq140
Length=11926
Score = 95.1 bits (104), Expect = 1e-14
Identities = 285/433 (66%), Gaps = 14/433 (3%)
Strand=Plus/Plus
Query 167358 ACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAAA 167417
||| ||||| ||||| || | ||| || | ||| ||||| || | || |||||| || |
Sbjct 3943 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 4002
Query 167418 GTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTTTGGG 167477
|| ||||||||| |||||| || ||||||||||||| | | |||||| ||
Sbjct 4003 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 4062
Query 167478 ATCGAAGAGCTTTCGAG-CCTCCTTGGTAAGCTTCGTAAAGATGTACCTCGTCTGAGACG 167536
| ||||| |||| | ||| ||| ||| || || ||||| || | | || |
Sbjct 4063 GTGGAAGATTGCCCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGCTG 4121
Query 167537 CATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGT 167596
| || || ||||| || || ||||||||||| || || || || ||||||||||
Sbjct 4122 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 4181
Query 167597 TATTCGAC-CCCGTATAATCGTTG-GCCAACTTGACGATCGTTTCAGCGAGGGAAA---- 167650
| || || ||| || ||| || || ||| || || | || |||
Sbjct 4182 TGTT--ACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGT----GGAAGTCAAACTGG 4235
Query 167651 CTTCGCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCA 167710
|||| || ||||| || || | || || | || || | || | ||| || ||||| |
Sbjct 4236 CTTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGA 4295
Query 167711 TCTCATCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGA 167770
| || | |||| || | |||||| | | | |||||| || ||| ||||||||
Sbjct 4296 TTTCTTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGA 4355
Query 167771 GACCATCTGCCAC 167783
|||| || |||||
Sbjct 4356 GACCGTCGGCCAC 4368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588971074688200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |