Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 55.1_202017-07-07] 669 sequences; 18,368,897 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq490 183 4e-41 seq334 100 3e-16 seq140 95.1 1e-14 >seq490 Length=110099 Score = 183 bits (202), Expect = 4e-41 Identities = 680/1053 (65%), Gaps = 37/1053 (4%) Strand=Plus/Plus Query 109988 CCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAG 110047 ||||||| | ||| |||| ||||| || ||||| || || || ||||| || || || Sbjct 13889 CCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGAAGATCTGGA 13948 Query 110048 CATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCG 110107 ||| | | || ||| | ||||||| || | | | || || | || | Sbjct 13949 TATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGAAAGCGTCGG 14008 Query 110108 CTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTT 110167 | |||||||| ||||| ||||||| || ||||| |||||| ||| || || Sbjct 14009 CAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTTGCGGGCCTCAG 14068 Query 110168 CTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGA 110227 || || || |||| ||| ||| || || || ||||| || ||| ||| || | Sbjct 14069 GCACTGGATAGTAGTTACGGGTGATTACAGTATCAAGGTTCTTTGTAACAACCTTGGTAA 14128 Query 110228 TTTCATGGAG---TTTGTCGTAATCGA----ACGTTTTCG-TCTCCTTATTGACATATTT 110279 | || || || |||| || || || ||||| | ||| | | | || Sbjct 14129 TCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGAA--GGCA----- 14181 Query 110280 GGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAA 110339 || ||||||| ||| |||||||| || |||| | || || | || |||| Sbjct 14182 -GGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTCCAT 14240 Query 110340 AATTTCCGTACACAAGTTGGAACTC---TTAATGACACCCAAGTTCTTCTGATTCGATTT 110396 ||||| ||||| | ||| ||| || ||| ||| | || ||| || || || || Sbjct 14241 GATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTT 14297 Query 110397 GGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAG 110456 ||||||| |||||||| ||| || || ||| |||||| || || || | || ||| Sbjct 14298 GGAGTTGGCAGCATCCTTGTAGCAGATATAAGGGACACCAGTCTCGGTTTGAGCCTCGAG 14357 Query 110457 AATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTG-CGTTAGCGAGACCTTCCTCCTCG 110514 ||||| ||| | | || | ||| || |||| | || | | ||| |||| ||| Sbjct 14358 GATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTC-TCG 14415 Query 110515 TACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTG 110574 || | || | | |||||||| | ||||| || || | ||| || || | Sbjct 14416 TAGCTCTCATAAAGCTTTTCAAATTCTTCGCCGTAAACGTCGGCAAGTCCAGGGCACTCG 14475 Query 110575 TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGA 110634 ||||||| | || | ||||| ||| | || || | ||||||||| || || | Sbjct 14476 GCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAG 14535 Query 110635 ATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGT 110694 ||||| | || ||||||| ||||| || |||| || | ||| ||||| | | Sbjct 14536 ATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTT 14595 Query 110695 AGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCC 110754 | || | ||||| | | ||| | |||||| || || ||||||| |||| || || Sbjct 14596 AAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACC- 14654 Query 110755 TTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGC 110808 | |||| ||| | || | ||| || || |||||||| | | | | | |||| Sbjct 14655 --AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGC 14712 Query 110809 ATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGA 110868 |||||||| || || | ||| | |||||| ||||| ||| ||| || ||||| Sbjct 14713 ATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGG 14772 Query 110869 ATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGT 110927 || | ||| || || | |||||||||||| || ||| || || ||||| ||| | Sbjct 14773 ATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCT-T 14831 Query 110928 GAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGA 110987 ||| ||| | || ||||||||||| || || |||| |||| | || ||||| || || Sbjct 14832 GAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGA 14891 Query 110988 CATCTGAGGACGAGGCGTTCCCGCATTGAAGAG 111020 ||| || || || || || || || ||||| || Sbjct 14892 CATTTGGGGTCGGGGAGTACCAGCGTTGAAAAG 14924 >seq334 Length=290900 Score = 100 bits (110), Expect = 3e-16 Identities = 210/308 (68%), Gaps = 19/308 (6%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || || || |||||||||||||| ||| |||| ||| || Sbjct 63576 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACC 63635 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| |||| ||||| ||||| ||||||| ||| ||||| |||||||| Sbjct 63636 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAAGAT 63695 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTT---GTC--- 119668 |||||||| || ||||| | || ||||| | ||| | ||| || ||| Sbjct 63696 ACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAA---CAAGATTTTTGGTCAGA 63752 Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTC-TATGCAGGGGACAGTTTGGATGGCTT 119727 || ||| |||||||||| |||||| | || || || || | || | || || | Sbjct 63753 GATCCATCGAAGAGCCCAGTCGGCCTT-CTTTCGGATACAAGGAATGGTGTCCATAGCGT 63811 Query 119728 CGAA----AAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAG 119783 | || ||||| | || |||| |||||||| || | || ||||| |||| Sbjct 63812 CAAAGAGGAAGTTTCGTC----GAGCAGTGTCCTTAATGTAGGTGTCGATGAGGAGAGAG 63867 Query 119784 TAGGTCTC 119791 |||||||| Sbjct 63868 TAGGTCTC 63875 >seq140 Length=11926 Score = 95.1 bits (104), Expect = 1e-14 Identities = 285/433 (66%), Gaps = 14/433 (3%) Strand=Plus/Plus Query 167358 ACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAAA 167417 ||| ||||| ||||| || | ||| || | ||| ||||| || | || |||||| || | Sbjct 3943 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 4002 Query 167418 GTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTTTGGG 167477 || ||||||||| |||||| || ||||||||||||| | | |||||| || Sbjct 4003 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 4062 Query 167478 ATCGAAGAGCTTTCGAG-CCTCCTTGGTAAGCTTCGTAAAGATGTACCTCGTCTGAGACG 167536 | ||||| |||| | ||| ||| ||| || || ||||| || | | || | Sbjct 4063 GTGGAAGATTGCCCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGCTG 4121 Query 167537 CATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGT 167596 | || || ||||| || || ||||||||||| || || || || |||||||||| Sbjct 4122 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 4181 Query 167597 TATTCGAC-CCCGTATAATCGTTG-GCCAACTTGACGATCGTTTCAGCGAGGGAAA---- 167650 | || || ||| || ||| || || ||| || || | || ||| Sbjct 4182 TGTT--ACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGT----GGAAGTCAAACTGG 4235 Query 167651 CTTCGCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCA 167710 |||| || ||||| || || | || || | || || | || | ||| || ||||| | Sbjct 4236 CTTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGA 4295 Query 167711 TCTCATCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGA 167770 | || | |||| || | |||||| | | | |||||| || ||| |||||||| Sbjct 4296 TTTCTTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGA 4355 Query 167771 GACCATCTGCCAC 167783 |||| || ||||| Sbjct 4356 GACCGTCGGCCAC 4368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588971074688200