Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
55.1_202017-07-07] 669 sequences; 18,368,897 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq490 154 2e-32
seq140 122 1e-22
seq334 114 2e-20
>seq490
Length=110099
Score = 154 bits (170), Expect = 2e-32
Identities = 713/1122 (64%), Gaps = 37/1122 (3%)
Strand=Plus/Plus
Query 106095 CCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGG 106154
||||||| || | ||||| | || | || |||||||||| || | | |||||||
Sbjct 13820 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 13879
Query 106155 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 106214
||| | || || | ||| || |||||| || | ||||| || || || || |
Sbjct 13880 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 13939
Query 106215 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAA 106269
|||| | ||| | ||| | || ||| | || || || |||| || | || |
Sbjct 13940 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 13999
Query 106270 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 106329
|| | || || ||||| || ||||| | ||||| ||||| || ||||| || ||
Sbjct 14000 AAG-----CGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGA 14054
Query 106330 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 106386
|| || || |||| || ||||| | || | | || || | || || ||
Sbjct 14055 GTTGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTATCAAGGTTCTT 14111
Query 106387 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 106446
||||||| ||| || || || || || |||| | ||| | |||| || |
Sbjct 14112 TGTAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTC 14171
Query 106447 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 106506
|| | ||||| || | || || | ||| || ||||| ||||| | |
Sbjct 14172 TACGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGA 14231
Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTC---TTAATCGTCCCCAAATTCTTTTG 106563
||||| | ||||| ||||| | ||| ||| || || || || | | ||||||
Sbjct 14232 ATACTCCATGATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTG 14288
Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623
||| ||| |||| |||||||||||| || || || || ||||| || ||
Sbjct 14289 GTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATATAAGGGACACCAGTCTCGGTTTG 14348
Query 106624 TGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGG-CGTTGGCCCGT-CC 106680
| || ||| || || ||| | | || | |||| | | | | || ||| | ||
Sbjct 14349 AGCCTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTT--CCCTTGCC 14405
Query 106681 CTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 106740
|| | |||||| | || || |||||| || || || |||||| || ||
Sbjct 14406 CTGCCTCTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCGCCGTAAACGTCGGCAAGTCC 14465
Query 106741 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 106800
|| || | | ||||| | ||||| ||| | ||| | || || |||||||||||
Sbjct 14466 AGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAA 14525
Query 106801 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 106860
||| || | ||||| |||| | || ||||| | | || |||| || | ||| ||
Sbjct 14526 AAGATCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATG 14585
Query 106861 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 106920
||| | ||| |||| ||| || | | ||| |||||||| ||||||||||||| ||
Sbjct 14586 GTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGC 14645
Query 106921 GATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 106974
|| | || ||||| ||| |||||| || || || |||||||||| |
Sbjct 14646 GAAGGCACC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTA 14702
Query 106975 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT 107034
| || ||||| ||||| || || | || | |||||| || || ||| ||
Sbjct 14703 AGCTCGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC 14762
Query 107035 ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGC 107094
|| || | | || || ||||| | |||||||| || || ||| ||||| || ||
Sbjct 14763 CTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGC 14822
Query 107095 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 107154
||| | | ||||| | |||||||| | || ||||| ||||| |||| | |||||
Sbjct 14823 ACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAA 14882
Query 107155 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 107196
||| ||||| || |||| || |||||||| ||||| ||
Sbjct 14883 GCATGATGACATTTGGGGTCGGGGAGTACCAGCGTTGAAAAG 14924
>seq140
Length=11926
Score = 122 bits (134), Expect = 1e-22
Identities = 286/428 (67%), Gaps = 8/428 (2%)
Strand=Plus/Plus
Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350
|| ||||||||||| || | ||||| | | |||||||| | ||| |||||| || |
Sbjct 3944 CCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATAA 4003
Query 168351 TCTGGTTCAATTGAGCGC---CCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGA 168407
||||||||||| |||| ||||| || ||||||||||||| | | |||||| |
Sbjct 4004 TCTGGTTCAAT---GCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCA 4060
Query 168408 GGATCAAAGATCTTGCGAG-CCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGTCTGAGA 168466
|| | ||||| |||| | || ||| ||| |||||||| || || | | ||
Sbjct 4061 GGGTGGAAGATTGCCCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGC 4119
Query 168467 AGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAAT 168526
|| || |||||||| ||||| ||||||||||| || || || || || || ||
Sbjct 4120 TGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGAT 4179
Query 168527 GTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTC 168586
|||||| || | ||| | ||| || ||||| ||| | || ||||
Sbjct 4180 GTTGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTGGAAGTCAAACTGGCTTC 4239
Query 168587 ACCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTC 168646
||||||||| || || | || |||| || || | || || || || ||||| |||||
Sbjct 4240 ACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGATTTC 4299
Query 168647 ATCCTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACC 168706
| |||| || | ||| ||| || | | || || | ||| ||| ||||||||
Sbjct 4300 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 4359
Query 168707 ATCCGCCA 168714
|| ||||
Sbjct 4360 GTCGGCCA 4367
>seq334
Length=290900
Score = 114 bits (126), Expect = 2e-20
Identities = 123/160 (77%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332
|||||| || |||||||||||| ||||| || || || || || |||||| || ||
Sbjct 63576 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACC 63635
Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 117391
||||||||||| |||||||| | ||| | || | ||| ||| || || ||||||||||
Sbjct 63636 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGC-GAAAGAACCAGAGAAGAAGA 63694
Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431
|||||||||| ||||| |||| || |||||| ||||
Sbjct 63695 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAA 63734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589975866285560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |