Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 55.1_202017-07-07] 669 sequences; 18,368,897 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq334 170 4e-37 seq490 95.1 3e-14 seq646 93.3 9e-14 >seq334 Length=290900 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||| | ||| || || || || || ||||| ||||| ||||||||||||| |||||| Sbjct 78005 TCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGT 77946 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || |||||||| || || || || |||||||| |||||||| || || || || || || Sbjct 77945 TCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACC 77886 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || |||||||| || || |||||| || || ||||| || || ||||| |||||||| Sbjct 77885 CTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACTTCAAG 77826 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || || | ||||| ||||| | |||||| Sbjct 77825 GGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77784 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||||||||| || ||||| ||||| || ||||| |||| |||||| | ||||| || Sbjct 78500 AACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTC 78441 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || ||||| || || || | |||||| || || |||||||| ||||| ||||| || Sbjct 78440 AAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTG 78381 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| ||||| || || ||||| || || |||||||| || | ||||| Sbjct 78380 AATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTT 78321 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| |||||||| || || || | ||||| Sbjct 78320 TCCGGTCAAAGTCTTGACAAAGATCTGCAT 78291 Score = 141 bits (156), Expect = 2e-28 Identities = 140/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 194960 TATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTT 195019 || |||| |||| ||||| || |||||||| ||||||||||| || ||||| | ||||| Sbjct 77685 TACTGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTT 77626 Query 195020 GTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT 195079 | ||||| ||||| || || || |||||||| || || |||||| || || ||||||| Sbjct 77625 GCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGT 77566 Query 195080 CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCA 195139 | ||| ||||||||||| || | ||||| || || | ||| || ||||| | ||||| Sbjct 77565 CGGAAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCA 77506 Query 195140 T 195140 | Sbjct 77505 T 77505 Score = 138 bits (152), Expect = 3e-27 Identities = 152/201 (76%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||| | ||| || || || || || ||||| ||||| ||||||||||||| |||||| Sbjct 78793 TCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGT 78734 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || |||||||| || || || || |||||||| |||||||| || || || || || || Sbjct 78733 TCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACC 78674 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTC 195095 || |||||||| || || ||||||||| || ||||| || ||| ||| ||||| Sbjct 78673 CTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGA---TTCGACTTC 78617 Query 195096 AAGGGTAACCGTCTTTCCTGT 195116 ||| || | ||||| || || Sbjct 78616 AAGAGTGATTGTCTTACCCGT 78596 Score = 123 bits (136), Expect = 6e-23 Identities = 134/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022 ||||||| | | ||||| ||||| || || ||||| || |||||||| | |||||||| Sbjct 78189 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTT 78130 Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082 |||| ||||| || || || ||||| ||||| || |||||| || || |||||||| | Sbjct 78129 GGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAG 78070 Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| || | |||||||| || | ||| || ||||| | ||||| Sbjct 78069 AGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 78012 >seq490 Length=110099 Score = 95.1 bits (104), Expect = 3e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 160587 TTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATT 160646 ||||||||||| |||||| |||||||||||||||||| | || || | ||||||||| Sbjct 14554 TTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATT 14495 Query 160647 GGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCG 160706 ||| ||| | |||||| || |||||||||| || ||||| || || || | Sbjct 14494 GGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTACGGCGAAGAATTTG 14435 Query 160707 AGACTCTTTATGAAAGATACGA 160728 | | |||||||| || ||||| Sbjct 14434 AAAAGCTTTATGAGAGCTACGA 14413 >seq646 Length=80598 Score = 93.3 bits (102), Expect = 9e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022 |||| || | ||| || || || || ||||||||||| || |||||||| | ||| || | Sbjct 65427 TGTAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCT 65486 Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082 |||| || || || || || ||||| || || || |||||| || || |||||||| | Sbjct 65487 GGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGG 65546 Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | || || || ||||| | |||||||| || Sbjct 65547 AGGACTCGACCTCGAGGGTGATGGTCTTTCCGGT 65580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109472090009123