Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
55.1_202017-07-07] 669 sequences; 18,368,897 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq334 89.7 3e-13
>seq334
Length=290900
Score = 89.7 bits (98), Expect = 3e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| || || ||||| ||||| ||||| | || |||| || || ||||| || |||||
Sbjct 78481 TCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAA 78422
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | ||||||||| || | || | || |||||||| ||||||| || |||
Sbjct 78421 ATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTG 78362
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | ||| | ||| || || | || || || ||||| || | |||||| |||
Sbjct 78361 TCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACA 78302
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 78301 AAGATCTGCATA 78290
Score = 86.0 bits (94), Expect = 4e-12
Identities = 138/196 (70%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| || || || || || || ||||| |||| |||| || || ||||||||||| ||
Sbjct 77974 TCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAG 77915
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| ||||||||||| || | || | ||||||||||| ||||| ||||| ||
Sbjct 77914 ATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGAC--AT 77857
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||| ||| | || || || | ||| |||||||| || ||||| || ||
Sbjct 77856 --TGTCGATGGTATCAGAGCTTTCGACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTT 77799
Query 34967 CACAAAGATCTGCATA 34982
|| ||||| ||||||
Sbjct 77798 GACGAAGATTTGCATA 77783
Score = 86.0 bits (94), Expect = 4e-12
Identities = 121/168 (72%), Gaps = 8/168 (5%)
Strand=Plus/Minus
Query 34819 TTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCC 34878
|||| |||| ||||| || |||||||| || || | |||||| ||||| | || | |
Sbjct 78174 TTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATAC 78115
Query 34879 CCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACA 34934
|||||||||| ||||||| ||||| || | ||||| ||| || |||||
Sbjct 78114 CCTCCTTGTCCTGAATCTTCGCCTTGAC--AT--TGTCGATGGTGTCAGAGGATTCAACC 78059
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| | || || || ||||| || |||||||| || || |||||||||
Sbjct 78058 TCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCATA 78011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324630953120232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |