Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 55.1_202017-07-07] 669 sequences; 18,368,897 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq334 89.7 3e-13 >seq334 Length=290900 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| ||||| | || |||| || || ||||| || ||||| Sbjct 78481 TCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAA 78422 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||||||| || | || | || |||||||| ||||||| || ||| Sbjct 78421 ATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTG 78362 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || || | || || || ||||| || | |||||| ||| Sbjct 78361 TCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACA 78302 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 78301 AAGATCTGCATA 78290 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || || || || || ||||| |||| |||| || || ||||||||||| || Sbjct 77974 TCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAG 77915 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||||||||| || | || | ||||||||||| ||||| ||||| || Sbjct 77914 ATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGAC--AT 77857 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| ||| | || || || | ||| |||||||| || ||||| || || Sbjct 77856 --TGTCGATGGTATCAGAGCTTTCGACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTT 77799 Query 34967 CACAAAGATCTGCATA 34982 || ||||| |||||| Sbjct 77798 GACGAAGATTTGCATA 77783 Score = 86.0 bits (94), Expect = 4e-12 Identities = 121/168 (72%), Gaps = 8/168 (5%) Strand=Plus/Minus Query 34819 TTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCC 34878 |||| |||| ||||| || |||||||| || || | |||||| ||||| | || | | Sbjct 78174 TTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATAC 78115 Query 34879 CCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACA 34934 |||||||||| ||||||| ||||| || | ||||| ||| || ||||| Sbjct 78114 CCTCCTTGTCCTGAATCTTCGCCTTGAC--AT--TGTCGATGGTGTCAGAGGATTCAACC 78059 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || || || ||||| || |||||||| || || ||||||||| Sbjct 78058 TCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCATA 78011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324630953120232