Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 55.1_202017-07-07] 669 sequences; 18,368,897 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq334 123 2e-22 seq12 113 4e-19 seq30 96.9 3e-14 seq167 87.8 1e-11 >seq334 Length=290900 Score = 123 bits (136), Expect = 2e-22 Identities = 164/223 (74%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||| | || ||||| |||||| || ||||| ||||||||||| | |||||| Sbjct 78002 GAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGG--ATATTGTAATCGGAAAGAGTT 77945 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||||||||||||||||||||| || || |||| |||||||||||| || || || Sbjct 77944 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 77885 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAG 563432 || || ||||| || || || || || || ||||||| | | || ||| || Sbjct 77884 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGAC-TTCAAG 77826 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||| ||||| || || || ||||| ||||| ||||||||| Sbjct 77825 GGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCATA 77783 Score = 109 bits (120), Expect = 4e-18 Identities = 160/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| ||||| ||||||||| || ||||| || ||||| || | ||||| | Sbjct 78508 AGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGG--ATGTTGTAGTCGGAAAGAGTAC 78451 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||| ||||||||||| || |||||||| | || |||||||||||||||||| |||| Sbjct 78450 GACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTT 78391 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433 | || || ||||| || || || || || || |||| || | | ||| ||| Sbjct 78390 CCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAG-ACGACTCGACTTCAAGA 78332 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | ||| || || || | ||| || || || || |||||| Sbjct 78331 GTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATA 78290 Score = 102 bits (112), Expect = 7e-16 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||| | || ||||| |||||| || ||||| ||||||||||| | |||||| Sbjct 78790 GAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGG--ATATTGTAATCGGAAAGAGTT 78733 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||||||||||||||||||||| || || |||| |||||||||||| || || || Sbjct 78732 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 78673 Query 563374 TCTTTATCTTGAATTTT 563390 || || ||||| || || Sbjct 78672 TCCTTGTCTTGGATCTT 78656 Score = 87.8 bits (96), Expect = 1e-11 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 563294 TATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTT 563353 || |||| || | ||||| || ||||||||| || || || ||||| || | || || Sbjct 77685 TACTGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTT 77626 Query 563354 GCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTAT 563413 |||| |||||||| || || || || ||||| || || || || || || || | Sbjct 77625 GCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGT 77566 Query 563414 CAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGC 563472 | | || | || ||| ||||| | ||| ||||| || ||||| || |||||||||||| Sbjct 77565 CGGAA-GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGC 77507 Query 563473 AT 563474 || Sbjct 77506 AT 77505 >seq12 Length=58435 Score = 113 bits (124), Expect = 4e-19 Identities = 143/192 (74%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAAC-A 550122 ||||| ||||| || || |||| || ||||| |||||| |||||| || |||||| | Sbjct 400 GCCAACGATCAGGGCAATCGAACAACACCATCATATGTTGCTTTCAATGATTCTGAACGA 341 Query 550123 TTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATACTATTTTT 550180 ||| | |||||||| || || |||||| || || |||||| ||| ||| |||| Sbjct 340 CTTA-TCGGTGATGCCGCGAAGAATCAAGTTGCAATG--AATCCTTACAACACTGTTTTC 284 Query 550181 GATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAG 550240 |||||||| || || || || | | ||||| ||| | |||||||| || |||||| Sbjct 283 GATGCTAAGCGGTTGATCGGCCGTAAGTTTAACGATGCCGAAGTTCAGGCCGACATGAAG 224 Query 550241 CATTGGCCTTTC 550252 |||||||||||| Sbjct 223 CATTGGCCTTTC 212 >seq30 Length=50836 Score = 96.9 bits (106), Expect = 3e-14 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 390855 ATTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCT 390914 |||||| || ||||||||||| | || || | ||| || | | ||| || ||| |||| Sbjct 14560 ATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTCT 14619 Query 390915 TTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGC 390974 ||||||||||||||| || ||||| || | || |||| ||| | |||||||| || | Sbjct 14620 TTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 14679 Query 390975 CATAACTTGGAAGAAAAATTC 390995 |||| | ||||| | ||||| Sbjct 14680 CATAGCGTGGAACCAGAATTC 14700 >seq167 Length=6891 Score = 87.8 bits (96), Expect = 1e-11 Identities = 130/184 (71%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462 |||| || || || || || || || ||||| || |||| || ||||| || || || Sbjct 3728 GTAAAAAGCGTTCCTGCCTACTTCAACGACTCTCAGCGTCTCGCCACTAAGGACGCCGGT 3669 Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522 ||||| || ||| | || || ||||||||||| |||||||||||||| || |||| Sbjct 3668 GCCATTGCCGGTCTTGAGGTGCTCCGTATTATCAACGAACCTACTGCTGCCGCTATTGCC 3609 Query 550523 TATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT---GTGGA 550579 || || ||||| | | | ||| | || | || || |||||||| || | |||| Sbjct 3608 TACGGTCTTGACGAGAAGACTGAGGAGGAGCGAAACGTCCTCATCTTCGACTTGGGTGGT 3549 Query 550580 GGTA 550583 |||| Sbjct 3548 GGTA 3545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029260620262810