Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
55.1_202017-07-07] 669 sequences; 18,368,897 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq334 123 2e-22
seq12 113 4e-19
seq30 96.9 3e-14
seq167 87.8 1e-11
>seq334
Length=290900
Score = 123 bits (136), Expect = 2e-22
Identities = 164/223 (74%), Gaps = 6/223 (3%)
Strand=Plus/Minus
Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313
|||||| | || ||||| |||||| || ||||| ||||||||||| | ||||||
Sbjct 78002 GAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGG--ATATTGTAATCGGAAAGAGTT 77945
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
| ||||||||||||||||||||| || || |||| |||||||||||| || || ||
Sbjct 77944 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 77885
Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAG 563432
|| || ||||| || || || || || || ||||||| | | || ||| ||
Sbjct 77884 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGAC-TTCAAG 77826
Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|||| ||||| || || || ||||| ||||| |||||||||
Sbjct 77825 GGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCATA 77783
Score = 109 bits (120), Expect = 4e-18
Identities = 160/222 (72%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314
|||||||| ||||| ||||||||| || ||||| || ||||| || | ||||| |
Sbjct 78508 AGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGG--ATGTTGTAGTCGGAAAGAGTAC 78451
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
||| ||||||||||| || |||||||| | || |||||||||||||||||| ||||
Sbjct 78450 GACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTT 78391
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433
| || || ||||| || || || || || || |||| || | | ||| |||
Sbjct 78390 CCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAG-ACGACTCGACTTCAAGA 78332
Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|| | ||| || || || | ||| || || || || ||||||
Sbjct 78331 GTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATA 78290
Score = 102 bits (112), Expect = 7e-16
Identities = 106/137 (77%), Gaps = 4/137 (3%)
Strand=Plus/Minus
Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313
|||||| | || ||||| |||||| || ||||| ||||||||||| | ||||||
Sbjct 78790 GAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGG--ATATTGTAATCGGAAAGAGTT 78733
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
| ||||||||||||||||||||| || || |||| |||||||||||| || || ||
Sbjct 78732 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 78673
Query 563374 TCTTTATCTTGAATTTT 563390
|| || ||||| || ||
Sbjct 78672 TCCTTGTCTTGGATCTT 78656
Score = 87.8 bits (96), Expect = 1e-11
Identities = 130/182 (71%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 563294 TATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTT 563353
|| |||| || | ||||| || ||||||||| || || || ||||| || | || ||
Sbjct 77685 TACTGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTT 77626
Query 563354 GCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTAT 563413
|||| |||||||| || || || || ||||| || || || || || || || |
Sbjct 77625 GCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGT 77566
Query 563414 CAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGC 563472
| | || | || ||| ||||| | ||| ||||| || ||||| || ||||||||||||
Sbjct 77565 CGGAA-GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGC 77507
Query 563473 AT 563474
||
Sbjct 77506 AT 77505
>seq12
Length=58435
Score = 113 bits (124), Expect = 4e-19
Identities = 143/192 (74%), Gaps = 6/192 (3%)
Strand=Plus/Minus
Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAAC-A 550122
||||| ||||| || || |||| || ||||| |||||| |||||| || |||||| |
Sbjct 400 GCCAACGATCAGGGCAATCGAACAACACCATCATATGTTGCTTTCAATGATTCTGAACGA 341
Query 550123 TTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATACTATTTTT 550180
||| | |||||||| || || |||||| || || |||||| ||| ||| ||||
Sbjct 340 CTTA-TCGGTGATGCCGCGAAGAATCAAGTTGCAATG--AATCCTTACAACACTGTTTTC 284
Query 550181 GATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAG 550240
|||||||| || || || || | | ||||| ||| | |||||||| || ||||||
Sbjct 283 GATGCTAAGCGGTTGATCGGCCGTAAGTTTAACGATGCCGAAGTTCAGGCCGACATGAAG 224
Query 550241 CATTGGCCTTTC 550252
||||||||||||
Sbjct 223 CATTGGCCTTTC 212
>seq30
Length=50836
Score = 96.9 bits (106), Expect = 3e-14
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 390855 ATTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCT 390914
|||||| || ||||||||||| | || || | ||| || | | ||| || ||| ||||
Sbjct 14560 ATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTCT 14619
Query 390915 TTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGC 390974
||||||||||||||| || ||||| || | || |||| ||| | |||||||| || |
Sbjct 14620 TTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 14679
Query 390975 CATAACTTGGAAGAAAAATTC 390995
|||| | ||||| | |||||
Sbjct 14680 CATAGCGTGGAACCAGAATTC 14700
>seq167
Length=6891
Score = 87.8 bits (96), Expect = 1e-11
Identities = 130/184 (71%), Gaps = 3/184 (2%)
Strand=Plus/Minus
Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462
|||| || || || || || || || ||||| || |||| || ||||| || || ||
Sbjct 3728 GTAAAAAGCGTTCCTGCCTACTTCAACGACTCTCAGCGTCTCGCCACTAAGGACGCCGGT 3669
Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522
||||| || ||| | || || ||||||||||| |||||||||||||| || ||||
Sbjct 3668 GCCATTGCCGGTCTTGAGGTGCTCCGTATTATCAACGAACCTACTGCTGCCGCTATTGCC 3609
Query 550523 TATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT---GTGGA 550579
|| || ||||| | | | ||| | || | || || |||||||| || | ||||
Sbjct 3608 TACGGTCTTGACGAGAAGACTGAGGAGGAGCGAAACGTCCTCATCTTCGACTTGGGTGGT 3549
Query 550580 GGTA 550583
||||
Sbjct 3548 GGTA 3545
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029260620262810
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |