Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 55.1_202017-07-07] 669 sequences; 18,368,897 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq490 187 5e-42 seq334 127 4e-24 >seq490 Length=110099 Score = 187 bits (206), Expect = 5e-42 Identities = 711/1094 (65%), Gaps = 43/1094 (4%) Strand=Plus/Plus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGG-GC 221424 || ||||| || || |||| ||| || ||||| | |||| ||| || ||| | || Sbjct 13861 CCTTCGTAAGATTCATAGGTACCAAACTCCTCGGCAAGTTCGCATGAC-GCCTCAAGCGC 13919 Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484 |||||||| || ||||| |||||| | |||||| | | ||||| | || ||| Sbjct 13920 CGCGTGGTATATCGTCTCGAAGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAA 13979 Query 221485 GGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543 ||||| || || | |||||| ||||||| || ||||| || || | ||| | || | Sbjct 13980 CGGCATGCGAAGGGCCATGAAAG-CGTCGGCAAGACCCTGGACACCAAGACCAACAGGTC 14038 Query 221544 TGTGTCTCCTGTTGGAA--GCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAG 221601 || | | ||||||| |||| || || ||||| ||||| |||| | ||| | Sbjct 14039 GATGGCGCATGTTGGAGTTGCGG--GCCTCAGGCACTGGATAGTAGTTACGGGTGATTAC 14096 Query 221602 ATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACAC 221661 | | | |||||| || | || || | |||| |||||| | |||| | Sbjct 14097 AGTATCAAGGTTCTTTGTAACAACCTTGGTAATCTCGTGCAGCTTTT------TGAAGTC 14150 Query 221662 CAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTT 221721 | ||| | ||| | || || || || || || |||| || || || Sbjct 14151 ATAGACGC----GACGTTCAAGG--TCTACGAAGGCAGGAAGAGCAAGAGAAGCAAGATT 14204 Query 221722 ACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCA 221781 ||| || || || || || | ||||| ||||| || ||||||||||| ||| | Sbjct 14205 ACAGACAGCAACTTCATCAGGAGAAGAATACTCCATGATTTCAGTACAGAGGTTACTGGA 14264 Query 221782 CTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT 221841 |||||||| || ||||| || || || |||||| |||||||| ||||||||| || Sbjct 14265 TTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGAT 14324 Query 221842 A-AAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG-CG 221899 | ||||||| |||||||| |||||| | || || | ||| || | ||||| | Sbjct 14325 ATAAGGGACA-CCAGTCTCGGTTTGAGCCTCGAGGATGGCGAACCAAAGCT-TCTGGGCT 14382 Query 221900 CTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAAC 221959 | | || || | | |||| ||| | || | ||| ||| | ||||| Sbjct 14383 TTGATAGTTTTCCTTCCCTTGCCCTGCCTCT---CGTAGCTCTCATAAAGCTTTTCAAAT 14439 Query 221960 TTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGC 222019 | ||| ||||| | ||| | || || || ||| |||||||||||| ||| |||| | | Sbjct 14440 TCTTCGCCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGTCCAATCC 14499 Query 222020 TTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCT 222079 | | || ||| | || |||||| || || | |||||| || || | || ||||| Sbjct 14500 CCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAAAAGATCA 14559 Query 222080 CTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCA 222139 | | || ||||||| || | ||| ||||| | || | || ||||| | ||| Sbjct 14560 CGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCAATGAAGTCAAATACATCA 14619 Query 222140 GCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCC 222199 |||||||| ||||| ||||||| ||| | || || || |||||||| ||||| ||||| Sbjct 14620 GCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCACCTTGATCA 14679 Query 222200 AC-CATC---CTCTCCAGAGCGTTG-AAGATGCGAAGGGTCGGTACCAGTCCGTTGGATC 222254 || ||| || | |||| | ||| | || || | || | | |||||||| Sbjct 14680 ACGTATCGAGCTGT----GGCGTCGTAAGCT-CGGAGCATAGGAATGATGCCGTTGGAGT 14734 Query 222255 GACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA--GACATG-C 222311 ||| ||||| || |||||| | || || | || || || | | | | | Sbjct 14735 AACCATTGGTACCGGCAATGTAGGAGCCCTTCGCAC---GGATATTGTGAATGTGAAGAC 14791 Query 222312 CGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCT 222371 | ||||||||||| || |||||| || ||| |||||||||| || ||| || | Sbjct 14792 CAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCAT 14851 Query 222372 CCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAAC 222431 | || ||||| ||||| | | || || || || || ||||| || | | || | || Sbjct 14852 CAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTAC 14911 Query 222432 AGGCGTTAAACAGC 222445 ||||| || ||| Sbjct 14912 CAGCGTTGAAAAGC 14925 >seq334 Length=290900 Score = 127 bits (140), Expect = 4e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || |||||||| || | || |||||||| |||||||| ||||| ||| ||||| || Sbjct 63734 TTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTC 63675 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 ||| ||||||||||||| ||| || || |||||| || || ||| || |||||| Sbjct 63674 GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACGAG 63615 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 |||||| | |||||||||||||||| || |||||||| || |||| ||| Sbjct 63614 CTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCCTGTCTCCTCTTCAC 63562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928837032535360