Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 55.1_202017-07-07] 669 sequences; 18,368,897 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq334 132 3e-25 seq12 131 1e-24 seq30 87.8 1e-11 >seq334 Length=290900 Score = 132 bits (146), Expect = 3e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| | || ||||| || ||| || || | ||| ||||| | |||||| Sbjct 78004 CGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTT 77945 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | |||||||||||| ||||| || || || || ||||| |||||||| || || || Sbjct 77944 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 77885 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 ||||||||||| ||||| |||||| || || ||||||| | | ||||||| Sbjct 77884 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGG 77825 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| ||||| |||||||| || || ||||| ||||| Sbjct 77824 GTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTG 77787 Score = 120 bits (132), Expect = 2e-21 Identities = 127/165 (77%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||| ||| ||||||||| ||||| |||||||| || | ||||| || |||||||| Sbjct 77671 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGG 77612 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGT 480724 || || ||||||||||| ||||| |||||| || || || || | | | | Sbjct 77611 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCA-C 77553 Query 480725 TTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||| || ||||| ||||||||||||||||| ||||||||||| Sbjct 77552 TTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTG 77508 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| ||||| ||| || || | || || || | ||||| Sbjct 78512 ACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGT 78453 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| |||||||| || ||||||||||| | ||||| |||||||||||||| || Sbjct 78452 ACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACC 78393 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| |||||||| || || || ||||| |||| | | | ||||| Sbjct 78392 TTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGA-CTTCAA 78334 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || ||||| | |||||| || || || || Sbjct 78333 GAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTG 78294 Score = 109 bits (120), Expect = 4e-18 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 480597 TAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGA 480656 ||||||| | ||||| ||| || ||||||||||| || || || | |||||||| Sbjct 78187 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 78128 Query 480657 TCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG 480716 |||||||| || || |||||||| |||||||| |||||| || || || |||| | Sbjct 78127 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAG 78068 Query 480717 TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | ||||| || ||||| || ||||| |||||||| |||||||| || Sbjct 78067 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTG 78015 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| | || ||||| || ||| || || | ||| ||||| | |||||| Sbjct 78792 CGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTT 78733 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | |||||||||||| ||||| || || || || ||||| |||||||| || || || Sbjct 78732 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 78673 Query 480672 TCCTTGTCTTGAATCTT 480688 ||||||||||| ||||| Sbjct 78672 TCCTTGTCTTGGATCTT 78656 >seq12 Length=58435 Score = 131 bits (144), Expect = 1e-24 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 474401 GCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACAT 474460 ||||| || || || ||| |||||||||||||||||||| |||| | ||| |||||| Sbjct 400 GCCAACGATCAGGGCAATCGAACAACACCATCATATGTTGCTTTCAATGATTCTGAACGA 341 Query 474461 CTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGAT 474520 ||||| || ||||| || || |||||| |||| |||||| || ||| |||| ||| Sbjct 340 CTTATCGGTGATGCCGCGAAGAATCAAGTTGCAATGAATCCTTACAACACTGTTTTCGAT 281 Query 474521 GCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCAT 474580 ||||| | ||||| || ||||| ||| | ||| || || || | || ||| ||| Sbjct 280 GCTAAGCGGTTGATCGGCCGTAAGTTTAACGATGCCGAAGTTCAGGCCGACATGAAGCAT 221 Query 474581 TGGCCTTTTAAGGTGAT 474597 |||||||| ||||| || Sbjct 220 TGGCCTTTCAAGGTAAT 204 >seq30 Length=50836 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 318687 ATTTCTTACAGTACCATCATATTCCACTTTAATATCTTCTAGTATTTTAACTAATTTTCT 318746 |||||| |||||||||||||| | || || | || || | ||| || ||| |||| Sbjct 14560 ATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTCT 14619 Query 318747 TTGTACATAACCTGTGTCTGCAGTTTTAATAGCAGTATTAATAATACCTTCTCTTCCTGC 318806 ||| | |||||| || || ||||| || | ||| |||| ||| | |||||||| || | Sbjct 14620 TTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 14679 Query 318807 CATAACTTGGAAAAAGAATTC 318827 |||| | ||||| ||||||| Sbjct 14680 CATAGCGTGGAACCAGAATTC 14700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268150503344012