Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
55.1_202017-07-07] 669 sequences; 18,368,897 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq334 132 3e-25
seq12 131 1e-24
seq30 87.8 1e-11
>seq334
Length=290900
Score = 132 bits (146), Expect = 3e-25
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
|| ||||| | || ||||| || ||| || || | ||| ||||| | ||||||
Sbjct 78004 CGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTT 77945
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| | |||||||||||| ||||| || || || || ||||| |||||||| || || ||
Sbjct 77944 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 77885
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731
||||||||||| ||||| |||||| || || ||||||| | | |||||||
Sbjct 77884 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGG 77825
Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| ||||| |||||||| || || ||||| |||||
Sbjct 77824 GTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTG 77787
Score = 120 bits (132), Expect = 2e-21
Identities = 127/165 (77%), Gaps = 2/165 (1%)
Strand=Plus/Minus
Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665
||||| ||| ||||||||| ||||| |||||||| || | ||||| || ||||||||
Sbjct 77671 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGG 77612
Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGT 480724
|| || ||||||||||| ||||| |||||| || || || || | | | |
Sbjct 77611 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCA-C 77553
Query 480725 TTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|||||| || ||||| ||||||||||||||||| |||||||||||
Sbjct 77552 TTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTG 77508
Score = 111 bits (122), Expect = 1e-18
Identities = 158/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| |||||||| ||||| ||||| ||| || || | || || || | |||||
Sbjct 78512 ACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGT 78453
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| ||| |||||||| || ||||||||||| | ||||| |||||||||||||| ||
Sbjct 78452 ACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACC 78393
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
||||||||| |||||||| || || || ||||| |||| | | | |||||
Sbjct 78392 TTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGA-CTTCAA 78334
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || ||||| || ||||| | |||||| || || || ||
Sbjct 78333 GAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTG 78294
Score = 109 bits (120), Expect = 4e-18
Identities = 128/173 (74%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 480597 TAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGA 480656
||||||| | ||||| ||| || ||||||||||| || || || | ||||||||
Sbjct 78187 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 78128
Query 480657 TCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG 480716
|||||||| || || |||||||| |||||||| |||||| || || || |||| |
Sbjct 78127 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAG 78068
Query 480717 TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| | ||||| || ||||| || ||||| |||||||| |||||||| ||
Sbjct 78067 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTG 78015
Score = 89.7 bits (98), Expect = 3e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
|| ||||| | || ||||| || ||| || || | ||| ||||| | ||||||
Sbjct 78792 CGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTT 78733
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| | |||||||||||| ||||| || || || || ||||| |||||||| || || ||
Sbjct 78732 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 78673
Query 480672 TCCTTGTCTTGAATCTT 480688
||||||||||| |||||
Sbjct 78672 TCCTTGTCTTGGATCTT 78656
>seq12
Length=58435
Score = 131 bits (144), Expect = 1e-24
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 474401 GCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACAT 474460
||||| || || || ||| |||||||||||||||||||| |||| | ||| ||||||
Sbjct 400 GCCAACGATCAGGGCAATCGAACAACACCATCATATGTTGCTTTCAATGATTCTGAACGA 341
Query 474461 CTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGAT 474520
||||| || ||||| || || |||||| |||| |||||| || ||| |||| |||
Sbjct 340 CTTATCGGTGATGCCGCGAAGAATCAAGTTGCAATGAATCCTTACAACACTGTTTTCGAT 281
Query 474521 GCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCAT 474580
||||| | ||||| || ||||| ||| | ||| || || || | || ||| |||
Sbjct 280 GCTAAGCGGTTGATCGGCCGTAAGTTTAACGATGCCGAAGTTCAGGCCGACATGAAGCAT 221
Query 474581 TGGCCTTTTAAGGTGAT 474597
|||||||| ||||| ||
Sbjct 220 TGGCCTTTCAAGGTAAT 204
>seq30
Length=50836
Score = 87.8 bits (96), Expect = 1e-11
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 318687 ATTTCTTACAGTACCATCATATTCCACTTTAATATCTTCTAGTATTTTAACTAATTTTCT 318746
|||||| |||||||||||||| | || || | || || | ||| || ||| ||||
Sbjct 14560 ATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTCT 14619
Query 318747 TTGTACATAACCTGTGTCTGCAGTTTTAATAGCAGTATTAATAATACCTTCTCTTCCTGC 318806
||| | |||||| || || ||||| || | ||| |||| ||| | |||||||| || |
Sbjct 14620 TTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 14679
Query 318807 CATAACTTGGAAAAAGAATTC 318827
|||| | ||||| |||||||
Sbjct 14680 CATAGCGTGGAACCAGAATTC 14700
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268150503344012
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |