Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
55.1_202017-07-07] 669 sequences; 18,368,897 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq334 111 3e-19
>seq334
Length=290900
Score = 111 bits (122), Expect = 3e-19
Identities = 166/236 (70%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| |||||||| | || || || || || || | |||| ||| || || ||
Sbjct 78526 ATTTGCATACCACCACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTG 78467
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|||||||| | || | | ||| || | |||||| || |||||||| |||| || |||
Sbjct 78466 TAGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGA 78407
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|||||||| || ||||| || || || || || | || | || ||||| || ||
Sbjct 78406 TCAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGAC 78347
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| ||||| ||||| ||||| || || || | || || ||||| || |||||
Sbjct 78346 GACTCGACTTCAAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78291
Score = 102 bits (112), Expect = 1e-16
Identities = 128/176 (73%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|||||||| | || || ||| || | || || || ||||| || |||| || ||
Sbjct 77680 TAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGG 77621
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|||||||| || || || || ||||| || |||| || | ||| || || ||||||
Sbjct 77620 TCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 77561
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| ||||| ||||| ||||| ||||| || || || || || || ||||||||
Sbjct 77560 GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77505
Score = 100 bits (110), Expect = 5e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||||| | || | || ||||| | |||| ||| || ||||| || |||
Sbjct 78013 ATACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCG 77954
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| | |||| ||| || | |||||||||||| || || | || || ||||||||
Sbjct 77953 GAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGG 77894
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || || || ||||| || |||| || | ||| || ||||| || ||
Sbjct 77893 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCG 77834
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| || || || ||||| || || || ||||| || || ||||||||
Sbjct 77833 ACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77784
Score = 87.8 bits (96), Expect = 3e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||| || |||||||||| | || | || ||||| | |||| ||| || |||||
Sbjct 78808 AATCTACATACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATT 78749
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
|| ||||| | |||| ||| || | |||||||||||| || || | || || ||
Sbjct 78748 GTAATCGGAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTG 78689
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
|||||| || || || || || ||||| || |||| || | || || ||||||
Sbjct 78688 ATCAGGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCT 78629
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAG 193339
|| || ||||| ||||| || || ||||| || ||
Sbjct 78628 CGATTCGACTTCAAGAGTGATTGTCTTACCCGTAAG 78593
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899646876640080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |