Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
55.1_202017-07-07] 669 sequences; 18,368,897 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq140 131 5e-25
seq490 107 6e-18
seq334 102 2e-16
seq30 93.3 1e-13
>seq140
Length=11926
Score = 131 bits (144), Expect = 5e-25
Identities = 263/384 (68%), Gaps = 12/384 (3%)
Strand=Plus/Plus
Query 59989 ACCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAATA 60048
||||||||| ||||| | || |||||||| | | ||| || | | || || ||||
Sbjct 3943 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 4002
Query 60049 AACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAA--AACCTTGTCGTCAATT 60106
| |||| |||| | |||||| || ||||| ||| | |||| ||||| |
Sbjct 4003 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTA-GTTGAGCAACC----CGTCATCT 4057
Query 60107 TCGGGA---AATATAGCCCGAGTAATCT-TGGATAATTGTGTGAAAATATACCTCTCGGA 60162
| || || || |||||||| ||| |||| || |||||| ||||| | | ||
Sbjct 4058 GCAGGGTGGAAGATTGCCCGAGTCATCCGTGGAAGGTT-TGTGAAGATATAACGAGCAGA 4116
Query 60163 TGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATT 60222
|||||||| || ||||| |||||| || |||||||| ||||| || | | |||||
Sbjct 4117 AGCTGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATT 4176
Query 60223 AATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGC 60282
||||||||| ||| ||||| ||||| || | ||| ||||| | | | ||||||||
Sbjct 4177 GATGTTGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTGGAAGTCAAACTGGC 4236
Query 60283 TTCACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAAT 60342
|||||| || |||||| | | | || ||||| || || | || ||||| || ||
Sbjct 4237 TTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGAT 4296
Query 60343 TTCGGAGTGGAGTTTTTTCTTGAA 60366
||| | ||| ||| ||||||
Sbjct 4297 TTCTTTGGTGAGGTTTCGCTTGAA 4320
>seq490
Length=110099
Score = 107 bits (118), Expect = 6e-18
Identities = 305/466 (65%), Gaps = 7/466 (2%)
Strand=Plus/Plus
Query 155859 AGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCT 155916
||||||||||||| |||| || | || | |||| || | |||| |||||||
Sbjct 14461 AGTCCAGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCAT--CGGATTCGACACGCT 14518
Query 155917 CCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCAT 155976
||| || | ||| ||| | || |||||||| || | || | |||||| |
Sbjct 14519 TCATGAAAAGATCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCT 14578
Query 155977 CGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGAT 156036
|| || ||||||| || || | ||| || | ||||| || ||||| ||||
Sbjct 14579 TACCATGGTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGAT 14638
Query 156037 ACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTAT 156093
| || || || |||| | |||| ||||| ||||| || || ||||| || |
Sbjct 14639 AGATGGCGAAGGCACCAGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGT 14698
Query 156094 TGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCG 156153
| | | | ||||||||||| || || ||||| |||||||| ||| ||| | |
Sbjct 14699 CGTAAGCTCGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGG 14758
Query 156154 AACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTT 156213
| || | || | ||| ||||| || || ||||||||||| | || || || |
Sbjct 14759 AGCCCTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCT 14818
Query 156214 GAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTA 156273
|||| || ||| | ||||| | | ||||| ||||| || ||||| | ||| | | |
Sbjct 14819 GAGCACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGA 14878
Query 156274 GATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAG 156319
| |||| || | ||| ||||| || || ||||||||||| ||
Sbjct 14879 GGAAGCATGATGACATTTGGGGTCGGGGAGTACCAGCGTTGAAAAG 14924
>seq334
Length=290900
Score = 102 bits (112), Expect = 2e-16
Identities = 155/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
|||||||||| |||||| | ||||||||| || ||||||| ||| | |
Sbjct 63796 TTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAAATCTT 63737
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
|||| | || ||| |||||||||||| || ||||| || || ||| |||| | |
Sbjct 63736 GTTTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTT 63677
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| || || || |||||||| ||||| ||| | | ||||| || || |||||||
Sbjct 63676 TCGCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACG 63617
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
| || || || | ||||||| || |||||||| ||||||
Sbjct 63616 AGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCC 63576
>seq30
Length=50836
Score = 93.3 bits (102), Expect = 1e-13
Identities = 200/288 (69%), Gaps = 12/288 (4%)
Strand=Plus/Plus
Query 302537 TATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGAC 302596
||||||| || || ||||||| ||| | | | ||| ||||| |||| || | |
Sbjct 14559 TATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTC 14618
Query 302597 GCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCAC 302656
|| ||||||||||| || || || ||||| |||||||| | ||| | |||||||
Sbjct 14619 TTTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCAC 14678
Query 302657 CCATAGCATGGAAGAATAGCTCTTCCG--GTCGTAGCCCCCCAATAAAGGAGCTCTCAAC 302714
||||||| ||||| | | |||| | ||| | || | ||| | | ||| | |||||
Sbjct 14679 CCATAGCGTGGAACCAGAATTCTTGTGGAGTC-AAACCACGCAA-ATACGAGTTTTCAAC 14736
Query 302715 GAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT- 302770
|||||| || | |||||| || | ||||| ||| | |||||||| | | || ||
Sbjct 14737 GAAACCTCGAGACTCGGGTCCGTAGTCGTC--TCTT-GAGAAGTGTGGTAATGACCGGTG 14793
Query 302771 TCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818
|| | | ||| | | |||||| ||||| |||||| ||| || ||||
Sbjct 14794 TCGGA-ATCCGAACGAGATACGTTTTCCTTCAACGAACTGTTGACCCA 14840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471804984223453
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |