Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
55.1_202017-07-07] 669 sequences; 18,368,897 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq334 102 5e-17
>seq334
Length=290900
Score = 102 bits (112), Expect = 5e-17
Identities = 154/217 (71%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|| ||| || || | ||| |||||| || || || || || || || | || ||||
Sbjct 77996 CAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATC 77937
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| ||||| |||||||||||||| ||||||||||| || | || | |||||||||||
Sbjct 77936 TTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTC 77877
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940
| || || ||||| || | ||||| ||| | ||||| |||| ||| |
Sbjct 77876 TTGGATCTTGGCCTTGAC--AT--TGTCGATGGTATCAGAGCTTTCGACTTCAAGGGTAA 77821
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| || || |||||||| || || ||||| |||||
Sbjct 77820 TGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77784
Score = 98.7 bits (108), Expect = 6e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || ||||||| ||| |||||| || ||||| ||||| || || | || ||||
Sbjct 78502 AGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 78443
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| ||||| || || || || |||| ||||||||| || | || | || ||||||||
Sbjct 78442 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 78383
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || ||| | || | ||| | |||||| |||| || || |||
Sbjct 78382 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTC 78323
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || | ||||| ||||||||||||||
Sbjct 78322 TTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78291
Score = 95.1 bits (104), Expect = 8e-15
Identities = 119/161 (74%), Gaps = 8/161 (5%)
Strand=Plus/Minus
Query 34821 CATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34880
|||| ||||||||||||||||||||||||| |||||| ||||| | || | |||||||
Sbjct 78168 CATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCCT 78109
Query 34881 TGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACG 34936
|||| | || || ||||| || | ||||| ||| || || || ||||
Sbjct 78108 TGTCCTGAATCTTCGCCTTGAC--AT--TGTCGATGGTGTCAGAGGATTCAACCTCAAGA 78053
Query 34937 GTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || |||||||| || || ||||| || || ||||||||
Sbjct 78052 GTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 78012
Score = 86.0 bits (94), Expect = 4e-12
Identities = 137/197 (70%), Gaps = 10/197 (5%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|| ||| || || | ||| |||||| || || || || || || || | || ||||
Sbjct 78784 CAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATC 78725
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| ||||| |||||||||||||| ||||||||||| || | || | |||||||||||
Sbjct 78724 TTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTC 78665
Query 34885 GTTTATTTTTTGTTTGACG-----GATGCTATCGATTCATTGGCCTCGACATCAACGGTT 34939
| || || |||||| |||| ||||| | || ||||| |||| ||
Sbjct 78664 TTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGAT-----TCGACTTCAAGAGTG 78610
Query 34940 ATGGTCTTTCCCGTGAG 34956
|| ||||| ||||| ||
Sbjct 78609 ATTGTCTTACCCGTAAG 78593
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325690144484111
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |