Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 55.1_202017-07-07] 669 sequences; 18,368,897 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq334 102 5e-17 >seq334 Length=290900 Score = 102 bits (112), Expect = 5e-17 Identities = 154/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| || || | ||| |||||| || || || || || || || | || |||| Sbjct 77996 CAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATC 77937 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| |||||||||||||| ||||||||||| || | || | ||||||||||| Sbjct 77936 TTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTC 77877 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || ||||| || | ||||| ||| | ||||| |||| ||| | Sbjct 77876 TTGGATCTTGGCCTTGAC--AT--TGTCGATGGTATCAGAGCTTTCGACTTCAAGGGTAA 77821 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| || || ||||| ||||| Sbjct 77820 TGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77784 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| |||||| || ||||| ||||| || || | || |||| Sbjct 78502 AGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 78443 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || || || || |||| ||||||||| || | || | || |||||||| Sbjct 78442 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 78383 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| | |||||| |||| || || ||| Sbjct 78382 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTC 78323 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | ||||| |||||||||||||| Sbjct 78322 TTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78291 Score = 95.1 bits (104), Expect = 8e-15 Identities = 119/161 (74%), Gaps = 8/161 (5%) Strand=Plus/Minus Query 34821 CATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34880 |||| ||||||||||||||||||||||||| |||||| ||||| | || | ||||||| Sbjct 78168 CATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCCT 78109 Query 34881 TGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACG 34936 |||| | || || ||||| || | ||||| ||| || || || |||| Sbjct 78108 TGTCCTGAATCTTCGCCTTGAC--AT--TGTCGATGGTGTCAGAGGATTCAACCTCAAGA 78053 Query 34937 GTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || |||||||| || || ||||| || || |||||||| Sbjct 78052 GTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 78012 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| || || | ||| |||||| || || || || || || || | || |||| Sbjct 78784 CAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATC 78725 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| |||||||||||||| ||||||||||| || | || | ||||||||||| Sbjct 78724 TTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTC 78665 Query 34885 GTTTATTTTTTGTTTGACG-----GATGCTATCGATTCATTGGCCTCGACATCAACGGTT 34939 | || || |||||| |||| ||||| | || ||||| |||| || Sbjct 78664 TTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGAT-----TCGACTTCAAGAGTG 78610 Query 34940 ATGGTCTTTCCCGTGAG 34956 || ||||| ||||| || Sbjct 78609 ATTGTCTTACCCGTAAG 78593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325690144484111