Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 55.1_202017-07-07] 669 sequences; 18,368,897 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq334 100 3e-16 >seq334 Length=290900 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | ||| | |||| ||||| || ||||| |||||||| ||| Sbjct 78517 CCACCACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAA 78458 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | || || ||||||||||||||| | |||| ||||||||||| ||||| Sbjct 78457 AGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGA 78398 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||| || || | | || | ||||| | | || ||| Sbjct 78397 ATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACT 78338 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| ||| | ||||| |||||||| || || || || || |||||| Sbjct 78337 TCAAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATA 78290 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||| | |||||| || | ||| | ||||| || ||||| || ||||||||| Sbjct 78010 CCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAA 77951 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||| |||||||| || || |||| || ||||||||||| || || Sbjct 77950 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 77891 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || ||||| || || || | | || | || || | | ||| ||| Sbjct 77890 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACT 77831 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| || | || |||||||| | ||||| ||||| ||||||||| Sbjct 77830 TCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCATA 77783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488539914550800